Browse Element(s) Details


Os.33154.2.S1_at

Description gb:AK073852.1
DB_XREF= gi:32983875
TID=Os.33154.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073I16, full insert sequence.
FL= gb:AK073852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5297011/11Deoxyhypusine synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52930OsAffx.3592.1.S1_at11/113+30309423..30310458hypothetical protein
LOC_Os03g52930Os.46808.2.S1_x_at1/113+30309423..30310458hypothetical protein
LOC_Os03g52940NANA3+30319513..30320025hypothetical protein
LOC_Os03g52950OsAffx.20261.1.S1_at1/113+30322351..30325665retrotransposon protein, putative, unclassified
LOC_Os03g52960OsAffx.25694.1.S1_at11/113+30326173..30326811hypothetical protein
LOC_Os03g52970Os.33154.2.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.15137.1.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.33154.1.S1_s_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52980Os.47782.1.S1_at10/113+30337025..30342401CwfJ C-terminus 1 containing protein, expressed
LOC_Os03g52990OsAffx.3593.1.S1_at11/113+30342863..30343285hypothetical protein
LOC_Os03g53000Os.53279.1.S1_at11/113+30346063..30348780double strand break repair protein, putative, expressed
LOC_Os03g53010NANA3+30352380..30353171Fatty acid desaturase family protein
LOC_Os03g53020Os.7116.1.S1_at10/113+30357240..30359856Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g53024NANA3+30359794..30359903NA
LOC_Os03g53030OsAffx.25695.1.S1_at11/113+30361011..30361253expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008612biological_processhypusine biosynthesis from peptidyl-lysine
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33154.2.S1_at--1029--2411Chr03:30336060..30336084 (25 bp)
AAAATGGTACTTACTCACGAACTGT
LOC_Os03g52970
Os.33154.2.S1_at--543--9891Chr03:30336067..30336091 (25 bp)
TACTTACTCACGAACTGTACGGCCA
LOC_Os03g52970
Os.33154.2.S1_at--379--5471Chr03:30336078..30336102 (25 bp)
GAACTGTACGGCCATGCTTGATCAT
LOC_Os03g52970
Os.33154.2.S1_at--755--8751Chr03:30336082..30336106 (25 bp)
TGTACGGCCATGCTTGATCATCTTT
LOC_Os03g52970
Os.33154.2.S1_at--684--4431Chr03:30336088..30336112 (25 bp)
GCCATGCTTGATCATCTTTCTTCAT
LOC_Os03g52970
Os.33154.2.S1_at--1104--431Chr03:30336101..30336125 (25 bp)
ATCTTTCTTCATTGTGCACATTCGA
LOC_Os03g52970
Os.33154.2.S1_at--196--3611Chr03:30336110..30336134 (25 bp)
CATTGTGCACATTCGATCATCTTTC
LOC_Os03g52970
Os.33154.2.S1_at--502--9031Chr03:30336115..30336139 (25 bp)
TGCACATTCGATCATCTTTCTTCGT
LOC_Os03g52970
Os.33154.2.S1_at--400--3991Chr03:30336137..30336161 (25 bp)
CGTGGTACACCACTGAGGCTGTAGT
LOC_Os03g52970
Os.33154.2.S1_at--135--2171Chr03:30336143..30336167 (25 bp)
ACACCACTGAGGCTGTAGTAGCATT
LOC_Os03g52970
Os.33154.2.S1_at--362--8331Chr03:30336153..30336177 (25 bp)
GGCTGTAGTAGCATTTTGCTTGCGT
LOC_Os03g52970
Target Sequence 
AAAATGGTACTTACTCACGAACTGTACGGCCATGCTTGATCATCTTTCTTCATTGTGCACATTCGATCATCTTTCTTCGT
GGTACACCACTGAGGCTGTAGTAGCATTTTGCTTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33154.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis