Browse Element(s) Details


Os.33350.3.S1_x_at

Description gb:NM_185251.1
DB_XREF= gi:34897587
GEN=OJ1723_B06.19
TID=Os.33350.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1723_B06.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1723_B06.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2249411/11expressed protein
LOC_Os08g017941/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22460OsAffx.22631.1.S1_at11/117+12627098..12627685hypothetical protein
LOC_Os07g22470OsAffx.21042.1.S1_at11/117+12630712..12632412hypothetical protein
LOC_Os07g22480OsAffx.22629.1.S1_at11/117+12639753..12644850hypothetical protein
LOC_Os07g22480OsAffx.30013.5.S1_x_at1/117+12639753..12644850hypothetical protein
LOC_Os07g22494Os.33350.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494OsAffx.5404.1.S1_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_s_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_x_at8/117+12651670..12654761expressed protein
LOC_Os07g22494Os.33350.1.S1_x_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_s_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_x_at2/117+12651670..12654761expressed protein
LOC_Os07g22494Os.42141.1.S1_x_at1/117+12651670..12654761expressed protein
LOC_Os07g22510Os.30411.1.S1_at11/117+12663580..12664674expressed protein
LOC_Os07g22520OsAffx.22628.1.S1_at11/117+12666279..12668588hypothetical protein
LOC_Os07g22534Os.30694.3.S1_x_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.1.S1_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.2.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534OsAffx.22627.1.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.7923.1.S1_x_at6/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.32421.1.A1_at1/117+12674396..12682626WD-repeat protein 18, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33350.3.S1_x_at--684--4091Chr07:12652601..12652625 (25 bp)
CGACTTGCTCTAGCTCGTTTAGATA
LOC_Os07g22494
Os.33350.3.S1_x_at--972--100323Chr10:12663513..12663532 (20 bp)
TAGATAACGAGCTGGCTCGGCTCGG
NONE
Os.33350.3.S1_x_at--1161--9431Chr07:12652566..12652590 (25 bp)
TCGGCTCGGCTCATTATCTAAACGA
LOC_Os07g22494
Os.33350.3.S1_x_at--479--1513Chr04:16493969..16493992 (24 bp)
AGCAGAAAACGCAGCTCGGCTCGGC
NONE
Os.33350.3.S1_x_at--1082--4091Chr07:12652379..12652403 (25 bp)
CGACGGCAAGGCAGACAGGCAGACC
LOC_Os07g22494
Os.33350.3.S1_x_at--250--6712Chr04:16494162..16494186 (25 bp)
GTTCGAGTGCGATGACCGACGACAC
NONE
Os.33350.3.S1_x_at--576--2411Chr07:12652319..12652343 (25 bp)
AAAAATCTGCGGTGCCAAGGTGACA
LOC_Os07g22494
Os.33350.3.S1_x_at--131--1051Chr07:12652302..12652326 (25 bp)
AGGTGACAGCGCACGCGACGGCCAA
LOC_Os07g22494
Os.33350.3.S1_x_at--1038--2591Chr07:12652269..12652293 (25 bp)
AACGCCGCGACGACCGACGGTGCTG
LOC_Os07g22494
Os.33350.3.S1_x_at--51--1671Chr07:12652243..12652267 (25 bp)
AGCCCTCAGCGCAGATTGGCAGATG
LOC_Os07g22494
Os.33350.3.S1_x_at--1021--8471Chr07:12652203..12652227 (25 bp)
TGGCGATGGCGCAAGCACTAGAGAC
LOC_Os07g22494
Target Sequence 
CGACTTGCTCTAGCTCGTTTAGATAACGAGCTGGCTCGGCTCGGCTCATTATCTAAACGAGCAGAAAACGCAGCTCGGCT
CGGCTCGGTCACGGCGAGGACGAGCACGACGGTCGACGGCAAGGCAGACAGGCAGACCGCAGCGGCGAGTTCGAGTGCGA
TGACCGACGACACAAAAATCTGCGGTGCCAAGGTGACAGCGCACGCGACGGCCAAGCTGGGGCAACGCCGCGACGACCGA
CGGTGCTGCAGCCCTCAGCGCAGATTGGCAGATGGTCGCGACAGGGAGGTGGCGATGGCGCAAGCACTAGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33350.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis