Browse Element(s) Details


Os.33351.1.S1_at

Description gb:AK100876.1
DB_XREF= gi:32986085
TID=Os.33351.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023126N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126N18, full insert sequence.
FL= gb:AK100876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3223011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32180OsAffx.12316.1.S1_at10/112+19002248..19006431hypothetical protein
LOC_Os02g32190OsAffx.24531.1.S1_at11/112+19010914..19014434hypothetical protein
LOC_Os02g32200Os.18269.1.S2_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32200Os.18269.1.S1_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32210Os.55268.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210OsAffx.24532.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57515.1.A1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57189.1.S1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32220Os.54381.1.S1_at2/112+19028471..19029896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32230Os.33351.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32230Os.54015.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32240NANA2+19035360..19035665hypothetical protein
LOC_Os02g32250Os.46107.1.S2_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_x_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S1_s_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_a_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32270OsAffx.2826.1.S1_at11/112+19048045..19048578hypothetical protein
LOC_Os02g32280OsAffx.24534.1.S1_at11/112+19053005..19057488expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33351.1.S1_at--958--2031Chr02:19034534..19034558 (25 bp)
ACTTTGGCCCCTACAAGATTCTGGA
LOC_Os02g32230
Os.33351.1.S1_at--1138--6951Chr02:19034572..19034596 (25 bp)
GTAGCTTATCGGCTGGATCTTCTCC
LOC_Os02g32230
Os.33351.1.S1_at--209--7971Chr02:19034586..19034610 (25 bp)
GGATCTTCTCCAGAGTAGCCAAATT
LOC_Os02g32230
Os.33351.1.S1_at--135--6971Chr02:19034600..19034624 (25 bp)
GTAGCCAAATTCATCCATTAGTGCA
LOC_Os02g32230
Os.33351.1.S1_at--4--1471Chr02:19034639..19034663 (25 bp)
AGAAGGTGATTCATTCTGGCATACA
LOC_Os02g32230
Os.33351.1.S1_at--627--8331Chr02:19034670..19034694 (25 bp)
GGCGGATCTTCCTGAAAACTGTGTT
LOC_Os02g32230
Os.33351.1.S1_at--309--9751Chr02:19034754..19034778 (25 bp)
TAATTCTGCAGTTCCTTACGGGTTA
LOC_Os02g32230
Os.33351.1.S1_at--748--4291Chr02:19034767..19034791 (25 bp)
CCTTACGGGTTAATTCGCTGGACTG
LOC_Os02g32230
Os.33351.1.S1_at--878--3151Chr02:19034778..19034802 (25 bp)
AATTCGCTGGACTGGTTTACCTGCA
LOC_Os02g32230
Os.33351.1.S1_at--733--9971Chr02:19034795..19034819 (25 bp)
TACCTGCATCGCTGGCTACATGGGA
LOC_Os02g32230
Os.33351.1.S1_at--233--3271Chr02:19034830..19034854 (25 bp)
CAACTTCAGCTTCGTTTTCCAGGAG
LOC_Os02g32230
Target Sequence 
ACTTTGGCCCCTACAAGATTCTGGAACGTATCGGTGAAGTAGCTTATCGGCTGGATCTTCTCCAGAGTAGCCAAATTCAT
CCATTAGTGCATGTGTTTTTGCTCAAGAAGGTGATTCATTCTGGCATACAAGTCCAGGCGGATCTTCCTGAAAACTGTGT
TTCTGAAGAAGCTGAGGNTGGTTCCAGAAGAAATACTTAGTCGTCAACTCATTAAGAGAGGTAATTCTGCAGTTCCTTAC
GGGTTAATTCGCTGGACTGGTTTACCTGCATCGCTGGCTACATGGGAGAATCTGCGTCAACTTCAGCTTCGTTTTCCAGG
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis