Browse Element(s) Details


Os.33624.1.S1_at

Description gb:AK099802.1
DB_XREF= gi:32985011
TID=Os.33624.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1523_A02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098A22, full insert sequence.
FL= gb:AK099802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g041201/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04074Os.35046.2.S1_x_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.35046.1.S1_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.14086.1.S1_s_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.46478.1.S1_at10/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04090Os.46735.1.S1_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_s_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_x_at6/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04100NANA10+1880224..1880581hypothetical protein
LOC_Os10g04110Os.47753.1.S1_at11/1110+1881932..1886668NB-ARC domain containing protein, expressed
LOC_Os10g04120OsAffx.20767.1.S1_at11/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04120Os.33624.1.S1_at1/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04130Os.54237.1.S1_at11/1110+1897478..1899973expressed protein
LOC_Os10g04140Os.26886.2.S1_s_at11/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.4.S1_at10/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.6.S1_s_at9/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.16467.1.S1_at7/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.51634.1.S1_at2/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.3425.1.S1_at1/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04150Os.26886.3.S1_x_at11/1110+1914019..1915194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04160OsAffx.18120.1.S1_at11/1110+1916845..1918030expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33624.1.S1_at--661--654Chr04:18255812..18255981 (25 bp)
ATGCAAAGGGCTGATTTGATTCAAC
NONE
Os.33624.1.S1_at--1145--5515Chr04:18255993..18256017 (25 bp)
GAAAACCAAGATTACTTTAGCTCAA
NONE
Os.33624.1.S1_at--915--6555Chr04:18256002..18256026 (25 bp)
GATTACTTTAGCTCAACAGTTTATA
NONE
Os.33624.1.S1_at--544--6892Chr03:14232408..14232432 (25 bp)
GTATAGATACAATTTCTGTGCCATA
NONE
Os.33624.1.S1_at--1151--10595Chr04:18255921..18256072 (25 bp)
TTCTGTGCCATATTGTAACTATTAC
NONE
Os.33624.1.S1_at--240--2474Chr03:22268863..22268887 (25 bp)
AACAACTTGAAAGGTCACATCACAA
NONE
Os.33624.1.S1_at--1096--7072Chr03:14232467..14232491 (25 bp)
GTCACATCACAAAAGGTACCAAACT
NONE
Os.33624.1.S1_at--235--7855Chr04:18256109..18256132 (24 bp)
GGTACCAAACTTCATATATTGTAAC
NONE
Os.33624.1.S1_at--968--2514Chr03:22268912..22268936 (25 bp)
AACTATTCTGAACGACTATTACAAT
NONE
Os.33624.1.S1_at--640--10215Chr04:18256146..18256170 (25 bp)
TATTACAATTGTTCACTACGCAGGA
NONE
Os.33624.1.S1_at--246--3492Chr03:14232539..14232563 (25 bp)
CAGGAATATAACTTCTCATACTCAG
NONE
Target Sequence 
ATGCAAAGGGCTGATTTGATTCAACAGGAATACTTTGAAAACCAAGATTACTTTAGCTCAACAGTTTATAGTAGATTTGT
ATAGATACAATTTCTGTGCCATATTGTAACTATTACAGTAAGATAACAACTTGAAAGGTCACATCACAAAAGGTACCAAA
CTTCATATATTGTAACTATTCTGAACGACTATTACAATTGTTCACTACGCAGGAATATAACTTCTCATACTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis