Browse Element(s) Details


Os.3381.1.S1_a_at

Description gb:AB011270.1
DB_XREF= gi:3983662
TID=Os.3381.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3381 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for importin-beta1, complete cds.
PROD=importin-beta1
FL= gb:AK065625.1 gb:AB011270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2851011/11Importin-beta N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28480Os.25494.1.S1_at6/115+16591887..16594358hypothetical protein
LOC_Os05g28490OsAffx.28933.1.S1_x_at5/115+16599513..16600388hypothetical protein
LOC_Os05g28490OsAffx.28933.2.S1_x_at1/115+16599513..16600388hypothetical protein
LOC_Os05g28500Os.14274.1.S1_at9/115+16606063..16610081ubiquitin family protein, putative, expressed
LOC_Os05g28510Os.3381.1.S1_a_at11/115+16615815..16620585Importin-beta N-terminal domain containing protein, expressed
LOC_Os05g28520Os.27154.1.S1_at11/115+16621099..16623986ser-thr protein kinase, putative, expressed
LOC_Os05g28530OsAffx.14862.1.S1_x_at11/115+16636776..16637522Glutaredoxin family protein
LOC_Os05g28540Os.20627.3.S1_x_at1/115+16639174..16643475retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28540OsAffx.1646.1.S1_x_at1/115+16639174..16643475retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28550OsAffx.22722.1.S1_at2/115+16643769..16646105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28550OsAffx.22722.1.S1_x_at1/115+16643769..16646105retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3381.1.S1_a_at--763--10731Chr05:16619923..16619947 (25 bp)
TTGAAGCTTACTCTGGCATACTCCA
LOC_Os05g28510
Os.3381.1.S1_a_at--800--6651Chr05:16619972..16619996 (25 bp)
GTTGATGATACCCTATGCAAGCCAT
LOC_Os05g28510
Os.3381.1.S1_a_at--1060--2651Chr05:16619990..16620014 (25 bp)
AAGCCATCTATTGCAGTTCACTGAA
LOC_Os05g28510
Os.3381.1.S1_a_at--142--3791Chr05:16620190..16620214 (25 bp)
CTCGGCTCAAGCTCAAAGGATCTGT
LOC_Os05g28510
Os.3381.1.S1_a_at--1040--6751Chr05:16620213..16620237 (25 bp)
GTTCAAAAGCAACCTCTTCCATGTT
LOC_Os05g28510
Os.3381.1.S1_a_at--226--6071Chr05:16620238..16620262 (25 bp)
GAGTTCCTGAGGGAGTGCCACGATT
LOC_Os05g28510
Os.3381.1.S1_a_at--283--6151Chr05:16620363..16620387 (25 bp)
GAGGTTTCTTTTGTGGCTGTGCCAA
LOC_Os05g28510
Os.3381.1.S1_a_at--845--7271Chr05:16620381..16620405 (25 bp)
GTGCCAAGACCATTTGCCACAGATT
LOC_Os05g28510
Os.3381.1.S1_a_at--621--751Chr05:16620428..16620452 (25 bp)
ATGTAGCGTCAGTCGTAGGCTGCTT
LOC_Os05g28510
Os.3381.1.S1_a_at--819--8691Chr05:16620454..16620478 (25 bp)
TGTGCTTTTGTCGTCAGTCTGTCAA
LOC_Os05g28510
Os.3381.1.S1_a_at--236--7091Chr05:16620474..16620498 (25 bp)
GTCAAGTCAGTTTATGCGTCGCATT
LOC_Os05g28510
Target Sequence 
TTGAAGCTTACTCTGGCATACTCCAGGGTATAAAGGGTGCAAAAGCTCAGTTGATGATACCCTATGCAAGCCATCTATTG
CAGTTCACTGAAGCTGTCTACAAGGACCGCAGCAGGGATGAGAGCGTGACAAAGGCTGCAGTTGCTGTCCTGGGGGATCT
TGCGGACACACTCGGCTCAAGCTCAAAGGATCTGTTCAAAAGCAACCTCTTCCATGTTGAGTTCCTGAGGGAGTGCCACG
ATTTGGATGATGAAGTTAGGGACACCGCGTCATGGGCCCAGGGAATGATAAACCAAGCACTGGTTTCTTAAGAGGGGATT
ATTTTGTTTTGTCAGTTATTGGGGAGGTTTCTTTTGTGGCTGTGCCAAGACCATTTGCCACAGATTGAACGAAAGGATAC
CAACATATATGTAGCGTCAGTCGTAGGCTGCTTCTGTGCTTTTGTCGTCAGTCTGTCAAGTCAGTTTATGCGTCGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3381.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis