Browse Element(s) Details


Os.3388.1.S1_x_at

Description gb:AF467733.1
DB_XREF= gi:18698671
TID=Os.3388.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3388 (NCBI UniGene Cluster)
DEF=Oryza sativa myb protein mRNA, complete cds.
PROD=myb protein
FL= gb:AF467733.1 gb:AY323484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4368011/11Myb-related protein Myb4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43640OsAffx.26449.1.S1_at11/114+25603585..25606389hypothetical protein
LOC_Os04g43650Os.12488.1.S1_at11/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43650OsAffx.15264.1.S1_at2/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43660Os.30529.1.S1_at11/114+25614047..25615913expressed protein
LOC_Os04g43670Os.49679.1.S1_at11/114+25616534..25618685expressed protein
LOC_Os04g43670OsAffx.24879.1.S1_at1/114+25616534..25618685expressed protein
LOC_Os04g43680Os.3388.2.S1_a_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43680Os.3388.1.S1_x_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43690Os.15788.1.S1_at11/114+25636564..25640943expressed protein
LOC_Os04g43700Os.17432.1.S1_at5/114+25641276..25646478Glycosyl transferase family 8 protein, expressed
LOC_Os04g43710Os.18633.1.S1_at11/114+25648722..25650103phosphoenolpyruvate carboxylase kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3388.1.S1_x_at--946--971Chr04:25625608..25625632 (25 bp)
AGGAGGACAAGGTCCTCGTCGCCCA
LOC_Os04g43680
Os.3388.1.S1_x_at--689--951Chr04:25625605..25625629 (25 bp)
AGGACAAGGTCCTCGTCGCCCACAT
LOC_Os04g43680
Os.3388.1.S1_x_at--741--9211Chr04:25625338..25625361 (24 bp)
TCCACGAGCTGCTTGGCAACAGGTG
LOC_Os04g43680
Os.3388.1.S1_x_at--166--5151Chr04:25624776..25624796 (21 bp)
GCAACAGGTGGTCCGCAATTGCCGC
LOC_Os04g43680
Os.3388.1.S1_x_at--885--5411Chr04:25624694..25624718 (25 bp)
GAAGCGCCTCGATGCGCCGGCTCAG
LOC_Os04g43680
Os.3388.1.S1_x_at--666--4791Chr04:25624675..25624699 (25 bp)
GCTCAGGGCGGTCATGTCGCGGCGA
LOC_Os04g43680
Os.3388.1.S1_x_at--109--3312Chr07:10896616..10896816 (25 bp)
CACAAGAAGCCGAAGAGCGCGAAGA
NONE
Os.3388.1.S1_x_at--101--4231Chr04:25624627..25624651 (25 bp)
CCGAAGAGCGCGAAGAAGCCAGCCG
LOC_Os04g43680
Os.3388.1.S1_x_at--772--9431Chr04:25624555..25624579 (25 bp)
TCGGTGACGGAGTCCTCGATGGCCT
LOC_Os04g43680
Os.3388.1.S1_x_at--947--2591Chr04:25624507..25624531 (25 bp)
AACGCCGGGATCAGCTCGGCGTCCG
LOC_Os04g43680
Os.3388.1.S1_x_at--1013--9671Chr04:25624452..25624476 (25 bp)
TCACCTCGGCTTCCGAGGAGTTCCA
LOC_Os04g43680
Target Sequence 
AGGAGGACAAGGTCCTCGTCGCCCACATCCAGCGCCACGGCCACGGCAACTGGCGCGCCCTGCCCAAGCAAGCCGGGCTG
CTGCGTTGCGGCAAGAGCTGCCGGCTCCGGTGGATCAACTACCTGCGGCCGGACATCAAGCGGGGCAACTTCTCCAAGGA
GGAGGAGGACACCATCATCCATCTCCACGAGCTGCTTGGCAACAGGTGGTCCGCAATTGCCGCCANGTTNGCCCGGGAGG
ACGGACAACGAGATCAAGAACGTGTGGCACACCCACCTCAAGAAGCGCCTCGATGCGCCGGCTCAGGGCGGTCATGTCGC
GGCGAGCGGCGGCAAGAAGCACAAGAAGCCGAAGAGCGCGAAGAAGCCAGCCGCCGCCGCCGCCGCGCCGCCGGCGTNGC
CCGAGCGGTCCGCCTCGTCGTCGGTGACGGAGTCCTCGATGGCCTCGTCGGTGGCGGAGGAGCCACGGCAACGCCGGGAT
CAGCTCGGCGTCCGCGTCCGTGTGCGCNAAGGAGGANAGCTCCTTCACCTCGGCTTCCGAGGAGTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3388.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis