Browse Element(s) Details


Os.33927.1.S1_at

Description gb:AK073490.1
DB_XREF= gi:32983513
TID=Os.33927.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D11.14 (P0031D11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039F18, full insert sequence.
FL= gb:AK073490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6216011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62120NANA1+36291156..36291593hypothetical protein
LOC_Os01g62130Os.28023.1.S1_at11/111+36293007..36293783Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62140Os.24942.4.A1_x_at5/111+36299711..36300508hypothetical protein
LOC_Os01g62140Os.24942.4.A1_at3/111+36299711..36300508hypothetical protein
LOC_Os01g62150Os.24942.1.S1_at11/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62150OsAffx.23889.1.S1_s_at10/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62160Os.33927.1.S1_at11/111+36311107..36314405expressed protein
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62220OsAffx.11696.1.S1_at11/111+36338499..36339869pentatricopeptide, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33927.1.S1_at--389--5731Chr01:36311667..36311691 (25 bp)
GACGGACAAACGGAGCTTCCAGGAG
LOC_Os01g62160
Os.33927.1.S1_at--1002--7111Chr01:36311632..36311656 (25 bp)
GTCAGTGGTCAGAGACTACATTCTT
LOC_Os01g62160
Os.33927.1.S1_at--1021--8331Chr01:36311579..36311603 (25 bp)
GGCTGATGACTCCATACCGTGAGAA
LOC_Os01g62160
Os.33927.1.S1_at--110--2911Chr01:36311556..36311580 (25 bp)
AAGGATCTATCTCCGGCGAAAGCCG
LOC_Os01g62160
Os.33927.1.S1_at--457--9051Chr01:36311495..36311519 (25 bp)
TGCAGGGTGCTCTGGCCAAGCTGAA
LOC_Os01g62160
Os.33927.1.S1_at--995--991Chr01:36311412..36311436 (25 bp)
AGGATCATCTACGTCTGCTGCCTGC
LOC_Os01g62160
Os.33927.1.S1_at--889--1771Chr01:36311312..36311336 (25 bp)
ACCGGCAGCAGTTCAGCGATGTCGC
LOC_Os01g62160
Os.33927.1.S1_at--700--1071Chr01:36311265..36311289 (25 bp)
AGGGACCAGCTGTGCCAGTATGTGA
LOC_Os01g62160
Os.33927.1.S1_at--905--1191Chr01:36311226..36311250 (25 bp)
AGTTTGCCGGCGTGATTCTGGTCGC
LOC_Os01g62160
Os.33927.1.S1_at--473--4932Chr09:12876842..12877189 (25 bp)
GCTTGATTACTTTTGTCTCTTTTTG
NONE
Os.33927.1.S1_at--1099--7151Chr01:36311184..36311208 (25 bp)
GTCTCTTTTTGTTTACCTTGACATG
LOC_Os01g62160
Target Sequence 
GACGGACAAACGGAGCTTCCAGGAGAGCCAGCTGGGTCAGTGGTCAGAGACTACATTCTTGGGGATGCAAGCTACCCTCT
CCTTCCCTGGCTGATGACTCCATACCGTGAGAAGGATCTATCTCCGGCGAAAGCCGACTTCAACAAGCGGCACGCCGCGA
CGATCATGGTGGTGCAGGGTGCTCTGGCCAAGCTGAAGGAGAGGTGGCAGGTTCTCAAGGGAGAGCTGTGGAGGCCGGAC
AAGCACCGGCTGCCGAGGATCATCTACGTCTGCTGCCTGCTCACCAACATCATGATCGACCTCGAGGACGCGGCGAGGGG
CGGCATGCCGCCGTCGCACAACCACGACGACGGCTACCGGCAGCAGTTCAGCGATGTCGCCGACGTCGGCGCGGCCGCGC
TGAGGGACCAGCTGTGCCAGTATGTGAGCAGGATTGGCAGCAGTTTGCCGGCGTGATTCTGGTCGCTTTGCTTGATTACT
TTTGTCTCTTTTTGTTTACCTTGACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis