Browse Element(s) Details


Os.34056.1.S1_at

Description gb:AK072974.1
DB_XREF= gi:32982997
TID=Os.34056.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146G15, full insert sequence.
FL= gb:AK072974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0211011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02054OsAffx.10373.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.10373.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02070OsAffx.10371.1.S1_at11/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02070OsAffx.20604.2.S1_at2/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02080OsAffx.15226.1.S1_at8/116+612912..613862hypothetical protein
LOC_Os06g02090OsAffx.15227.1.S1_s_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02090OsAffx.15227.2.S1_x_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02100Os.49022.1.S1_at11/116+622552..625087F-box domain containing protein, expressed
LOC_Os06g02110Os.34056.1.S1_at11/116+625262..627762F-box domain containing protein, expressed
LOC_Os06g02110Os.55536.1.S1_at1/116+625262..627762F-box domain containing protein, expressed
LOC_Os06g02120Os.21199.1.S1_s_at11/116+628710..632784pentatricopeptide, putative, expressed
LOC_Os06g02130Os.15324.1.S1_at11/116+633263..639451G-protein alpha subunit, putative, expressed
LOC_Os06g02144Os.7894.1.S1_at11/116+642711..6457266-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os06g02160Os.35821.1.S1_at7/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02160Os.33192.1.S1_at1/116+646480..655657AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34056.1.S1_at--510--8091Chr06:627189..627213 (25 bp)
GGAGCCCTCCATTTTCTTTCAAGAA
LOC_Os06g02110
Os.34056.1.S1_at--1104--5731Chr06:627410..627434 (25 bp)
GACGGCCAGTGATTGCTGCACAAGA
LOC_Os06g02110
Os.34056.1.S1_at--453--1371Chr06:627432..627456 (25 bp)
AGAGCTCTGCTCTTATCATCTGATT
LOC_Os06g02110
Os.34056.1.S1_at--994--471Chr06:627449..627473 (25 bp)
ATCTGATTCTGAGACTCTCTTCTGA
LOC_Os06g02110
Os.34056.1.S1_at--803--6631Chr06:627540..627564 (25 bp)
GTTGTTAGCTGCATTCTCTAGTCTA
LOC_Os06g02110
Os.34056.1.S1_at--365--3111Chr06:627564..627588 (25 bp)
AATATTTTCGAGGTGCACTGGATGC
LOC_Os06g02110
Os.34056.1.S1_at--761--5091Chr06:627578..627602 (25 bp)
GCACTGGATGCTTTTGTACCTAAAC
LOC_Os06g02110
Os.34056.1.S1_at--303--1191Chr06:627607..627631 (25 bp)
AGTAGCTGTTGCTTTTATGCTGGAA
LOC_Os06g02110
Os.34056.1.S1_at--79--2851Chr06:627630..627654 (25 bp)
AAGTCTGGATTCTGGAACTCGCTAC
LOC_Os06g02110
Os.34056.1.S1_at--1021--9311Chr06:627648..627672 (25 bp)
TCGCTACCGTTGAGGATTTCCACTG
LOC_Os06g02110
Os.34056.1.S1_at--258--10471Chr06:627695..627719 (25 bp)
TTACGAGTGTTTGAGCTTAGCTGCT
LOC_Os06g02110
Target Sequence 
GGAGCCCTCCATTTTCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTACTCTCAG
CCATTGAGCCTGCATGGGTTNGGTGATGATGCAGATGCTGTGTGGGATCCTAACACTGATGACAACCTCGTGTTCAAAAG
AAACTGGTACCGCCAGCTGCAGGCCTTGTGGGTGTACCCAAGCATGTTCTATTCAGCGGGAGACGGCCAGTGATTGCTGC
ACAAGAGCTCTGCTCTTATCATCTGATTCTGAGACTCTCTTCTGAATTCTGATGTAGGGCAGAGCATCTTAATGCTTAGC
TTAATAATACTTGCAGTCGTTTTGTAGCTCAGTTGTTAGCTGCATTCTCTAGTCTAATATTTTCGAGGTGCACTGGATGC
TTTTGTACCTAAACTATTAGTAGCTGTTGCTTTTATGCTGGAAGTCTGGATTCTGGAACTCGCTACCGTTGAGGATTTCC
ACTGGTGATGGAGATAATGTTTCGTTTTACGAGTGTTTGAGCTTAGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis