Browse Element(s) Details


Os.34129.1.S1_x_at

Description gb:AK072735.1
DB_XREF= gi:32982758
TID=Os.34129.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141D23, full insert sequence.
FL= gb:AK072735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1906010/11Transport protein particle component, Bet3 containing protein, expressed
LOC_Os09g069702/11Transport protein particle component, Bet3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19009NANA7+11254554..11255343NA
LOC_Os07g19020OsAffx.5366.1.S1_at9/117+11259497..11261099hypothetical protein
LOC_Os07g19020OsAffx.535.1.S1_at1/117+11259497..11261099hypothetical protein
LOC_Os07g19030Os.8204.1.S1_at11/117+11267234..11271797Tic22-like family protein, expressed
LOC_Os07g19040OsAffx.16333.1.S1_at11/117+11272299..11273192Hevamine A precursor, putative
LOC_Os07g19050OsAffx.5367.1.S1_at10/117+11274920..11276403hypothetical protein
LOC_Os07g19060Os.34129.1.S1_x_at10/117+11278610..11283630Transport protein particle component, Bet3 containing protein, expressed
LOC_Os07g19070Os.15959.1.S1_at11/117+11286296..11290354expressed protein
LOC_Os07g19070OsAffx.5368.1.S1_at1/117+11286296..11290354expressed protein
LOC_Os07g19080OsAffx.5369.1.S1_at11/117+11292030..11293410hypothetical protein
LOC_Os07g19090OsAffx.31811.3.S1_x_at9/117+11297578..11298381Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34129.1.S1_x_at--7--7611Chr07:11280346..11280370 (25 bp)
GGGCACATTTGTTCTTCAAGATAAC
LOC_Os07g19060
Os.34129.1.S1_x_at--1161--1251Chr07:11280328..11280352 (25 bp)
AGATAACCATTTCCGGTGGCTTACT
LOC_Os07g19060
Os.34129.1.S1_x_at--955--8291Chr07:11280311..11280335 (25 bp)
GGCTTACTCGTGTTTCTGTAGATCC
LOC_Os07g19060
Os.34129.1.S1_x_at--791--2471Chr07:11280247..11280271 (25 bp)
AACACTAGGTGATAGCGCAGCCCAA
LOC_Os07g19060
Os.34129.1.S1_x_at--589--2212Chr09:3372505..3372529 (25 bp)
ACAAGCATGCTTCTGTACTTTCCAT
LOC_Os09g06970
Os.34129.1.S1_x_at--628--192Chr09:3372169..3372589 (25 bp)
ATTTCTTGTTCTGTCACTGCAGACA
LOC_Os09g06970
Os.34129.1.S1_x_at--839--4991NONE
GCATGTTCTTTTGTTGTGCGCATAA
NONE
Os.34129.1.S1_x_at--218--3631Chr07:11278817..11278841 (25 bp)
CTTGTTCTTACTGGCACATGTTTAC
LOC_Os07g19060
Os.34129.1.S1_x_at--505--2111Chr07:11278802..11278826 (25 bp)
ACATGTTTACTTTTCCTCATACCTG
LOC_Os07g19060
Os.34129.1.S1_x_at--697--311Chr07:11278784..11278808 (25 bp)
ATACCTGCCTTGTGCGCTTATTAAG
LOC_Os07g19060
Os.34129.1.S1_x_at--398--1951Chr07:11278694..11278718 (25 bp)
ACTGGCTATAGCTAACTTTTGTTGT
LOC_Os07g19060
Target Sequence 
GGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCTGTAGATCCATCTGTAGAGAGCATGGATG
CAACTGAGAATGATTCTACAACACTAGGTGATAGCGCAGCCCAAACNAACAAGCATGCTTCTGTACTTTCCATGCGGGAT
AATAAGAGGTGCCTTGACCAATTTGGGGATTTCTTGTTCTGTCACTGCAGACATGTCCAACCTTCCANGCATGTTCTTTT
GTTGTGCGCATAAAGACATGAGCTGCAATAAATGATTTGAATACCATTATATGCATGCTTGTGGTATAAAGTGGTCTGTA
CATTCAAGGAGGGGGGAAACCCNGCCGTGTAGCTGGTCTTTTTTTTTTTTNNCCTTTCCCCTCTTGTTCTTACTGGCACA
TGTTTACTTTTCCTCATACCTGCCTTGTGCGCTTATTAAGATTGGTGTAATTCTGTGATCCAAAATGTTGACAAGGGAAG
ACAAATGTAATATTTNCTCCTGAGAGACTGGCTATAGCTAACTTTTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34129.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis