Browse Element(s) Details


Os.34283.2.S1_x_at

Description gb:AK120515.1
DB_XREF= gi:37990138
TID=Os.34283.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124A21, full insert sequence.
FL= gb:AK120515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1216011/11GH3 auxin-responsive promoter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12120NANA1+6603323..6604041hypothetical protein
LOC_Os01g12130Os.27838.1.S1_at11/111+6609156..6610707nodulin MtN3 family protein, putative, expressed
LOC_Os01g12140OsAffx.9910.1.S1_x_at11/111+6612205..6612570hypothetical protein
LOC_Os01g12150OsAffx.32171.1.S1_x_at11/111+6613534..6615625hypothetical protein
LOC_Os01g12150OsAffx.32171.2.S1_at7/111+6613534..6615625hypothetical protein
LOC_Os01g12150Os.49487.1.S1_at1/111+6613534..6615625hypothetical protein
LOC_Os01g12160Os.34283.1.S1_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12160Os.34283.2.S1_x_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein
LOC_Os01g12190Os.47598.1.S1_at11/111+6646595..6647321expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_x_at9/111+6649926..6652092expressed protein
LOC_Os01g12200Os.3507.1.S1_at8/111+6649926..6652092expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_at4/111+6649926..6652092expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009585biological_processred, far-red light phototransduction
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0009864biological_processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010252biological_processauxin homeostasis
GO:0018117biological_processprotein amino acid adenylylation
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34283.2.S1_x_at--249--5651Chr01:6624650..6624674 (25 bp)
GACATGCTTCACCACATCATTTAGT
LOC_Os01g12160
Os.34283.2.S1_x_at--751--3451Chr01:6624579..6624603 (25 bp)
CGTTGCTTTCTTATCCGTAACTGGA
LOC_Os01g12160
Os.34283.2.S1_x_at--443--2411Chr01:6624541..6624565 (25 bp)
AAACACACAGTCATTAGCAGCCTCT
LOC_Os01g12160
Os.34283.2.S1_x_at--129--1491Chr01:6624503..6624527 (25 bp)
AGCAATGCATATCGGTGGTCACAGT
LOC_Os01g12160
Os.34283.2.S1_x_at--867--1411Chr01:6624468..6624492 (25 bp)
AGAACTTTCGCCTCATTGCTTTTTT
LOC_Os01g12160
Os.34283.2.S1_x_at--370--9311Chr01:6624421..6624445 (25 bp)
TCCCCTTTGTTGACTTGAGCTCTGA
LOC_Os01g12160
Os.34283.2.S1_x_at--129--4951Chr01:6624373..6624397 (25 bp)
GCATTGACTTCATTTGGCCTTCCAA
LOC_Os01g12160
Os.34283.2.S1_x_at--956--10791Chr01:6624344..6624368 (25 bp)
TTGGGCTAAATGGTCACTCTGGTCT
LOC_Os01g12160
Os.34283.2.S1_x_at--30--10051Chr01:6624271..6624295 (25 bp)
TAGATGTGCCTTTCTGTTTGGTAGA
LOC_Os01g12160
Os.34283.2.S1_x_at--70--6051Chr01:6624213..6624237 (25 bp)
GAGATCTGAAGTTGCCATTGCCTTT
LOC_Os01g12160
Os.34283.2.S1_x_at--907--3592Chr03:20480435..20480464 (25 bp)
CATTGCCTTTTCTGTTTGGTTGTCT
NONE
Target Sequence 
GACATGCTTCACCACATCATTTAGTGTAATATAATTAGCTTATGACAGTTTACCTGCACCTGTTGCATGCCCGTTGCTTT
CTTATCCGTAACTGGAGAGGCAGGTTTGCAAACACACAGTCATTAGCAGCCTCTGCTTTGTCCTGACAGCAATGCATATC
GGTGGTCACAGTGACAGCACAGAGAACTTTCGCCTCATTGCTTTTTTTCCCCTTTGTTGACTTGTTTTTTCCCCTTTGTT
GACTTGAGCTCTGACAGTCTGATTGTCCAAAGGTGGGGCATTGACTTCATTTGGCCTTCCAAACCCTTGGGCTAAATGGT
CACTCTGGTCTTGAAAACTTGGATCTTTTTTTATTTTTTGTTGTCAAAGAATTGTATTGTAGATGTGCCTTTCTGTTTGG
TAGATTTAAAGGACCATGACCAATGGGAAAACTTCAGGAGATCTGAAGTTGCCATTGCCTTTTCTGTTTGGTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34283.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis