Browse Element(s) Details


Os.34335.1.S1_x_at

Description gb:AK071815.1
DB_XREF= gi:32981838
TID=Os.34335.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0702H08.13 (P0702H08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114D14, full insert sequence.
FL= gb:AK071815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g346609/11expressed protein
LOC_Os01g359906/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34620Os.37652.2.S1_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.1.S1_a_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_x_at6/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_at2/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34639NANA1+19433637..19434067NA
LOC_Os01g34650OsAffx.17536.1.S1_at1/111+19435496..19436383NA
LOC_Os01g34660Os.34335.1.S1_x_at9/111+19437755..19440162expressed protein
LOC_Os01g34660Os.34335.1.S1_at7/111+19437755..19440162expressed protein
LOC_Os01g34670Os.32787.2.S1_x_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34670Os.32787.3.S1_s_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34680Os.41057.1.S1_at10/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.55478.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.5306.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34690Os.8252.1.S1_s_at11/111+19456826..19460730expressed protein
LOC_Os01g34690Os.8252.1.S1_at4/111+19456826..19460730expressed protein
LOC_Os01g34690Os.37713.1.S1_at1/111+19456826..19460730expressed protein
LOC_Os01g34700Os.7133.1.S1_at11/111+19462649..19466740Dienelactone hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34335.1.S1_x_at--860--672Chr01:20238639..20238663 (25 bp)
ATGAAACTGAGCCTGTTTCTGCTAA
LOC_Os01g35990
Os.34335.1.S1_x_at--977--51Chr01:19438236..19438260 (25 bp)
ATTGCAATATGCCAACCCGATTTTC
LOC_Os01g34660
Os.34335.1.S1_x_at--672--3271Chr01:19438208..19438232 (25 bp)
CAAAAGCAGAATTTCCAGTCGGATC
LOC_Os01g34660
Os.34335.1.S1_x_at--389--6452Chr01:20238561..20238585 (25 bp)
GATCAAGTTTTGTTACTCCTCGAAA
LOC_Os01g35990
Os.34335.1.S1_x_at--514--5752Chr01:20238518..20238542 (25 bp)
GACGGACCATAAGGATTCTGCAGAA
LOC_Os01g35990
Os.34335.1.S1_x_at--1137--1192Chr01:20238448..20238472 (25 bp)
AGTTCAGTTACTGGCAAGGCCCCTA
LOC_Os01g35990
Os.34335.1.S1_x_at--255--2851Chr01:19438038..19438062 (25 bp)
AAGTCAGCTCCAAAGGACCGTGTGA
LOC_Os01g34660
Os.34335.1.S1_x_at--63--1111Chr01:19437996..19438020 (25 bp)
AGTGGTTCTGCTCAGATGTCTGGTA
LOC_Os01g34660
Os.34335.1.S1_x_at--376--7071Chr01:19437879..19437903 (25 bp)
GTAATACCATTCTTTATGCAATAAG
LOC_Os01g34660
Os.34335.1.S1_x_at--662--2251Chr01:20238136..20238160 (25 bp)
AAATTTGAACCATCACGCAGTGTAA
LOC_Os01g35990
Os.34335.1.S1_x_at--207--2591Chr01:20238112..20238136 (25 bp)
AACGAAACATGAACTGCCCAGAGGT
LOC_Os01g35990
Target Sequence 
ATGAAACTGAGCCTGTTTCTGCTAACAAAATTGCAATATGCCAACCCGATTTTCCTTCAAAAGCAGAATTTCCAGTCGGA
TCAAGTTTTGTTACTCCTCGAAAGAACAAACTGGTGGATGTGACGGACCATAAGGATTCTGCAGAACTGGTCAAGACAAG
AAGCATTCAGAACAAGAAAGGGGAGATGCCAAGTTCAGTTACTGGCAAGGCCCCTACAATGCCTACCAAGTCAGCTCCAA
AGGACCGTGTGAAAAATAAATCTGTAGCAAGTGGTTCTGCTCAGATGTCTGGTAGTTCAAGGAAGCGGGCAAGAAAGGGG
TGGACTACGCTGAAACAGATTGCTGAAAAGGAAGAGCTTGAGAGAAAAGAGAAGATGGGTAACTTTGTAATACCATTCTT
TATGCAATAAGAGATNNTACNACTCACGCNNANTGTAANNTTTATNNTTGGNGTATTTGNTGAGAATNGCATACAAAANT
TNTGATCATNTTTTGAGTTNCTAAAATTTGAACCATCACGCAGTGTAAACGAAACATGAACTGCCCAGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34335.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis