Browse Element(s) Details


Os.3440.1.S2_at

Description gb:AK066506.1
DB_XREF= gi:32976524
TID=Os.3440.1
CNT=45
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3440 (NCBI UniGene Cluster)
UG_TITLE=MRNA for 14-3-3-like protein (gf14-e gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071A03, full insert sequence.
FL= gb:AB100246.1 gb:AK104907.1 gb:AK066506.1 gb:AK068248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3697411/1114-3-3-like protein B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36940Os.17177.1.S1_at11/112+22305964..22307266expressed protein
LOC_Os02g36940OsAffx.22650.2.S1_x_at1/112+22305964..22307266expressed protein
LOC_Os02g36950Os.8146.1.S1_at11/112+22314003..22315404expressed protein
LOC_Os02g36950OsAffx.22650.1.S1_x_at1/112+22314003..22315404expressed protein
LOC_Os02g36960Os.53399.1.S1_at10/112+22321453..22325936choline transporter, putative, expressed
LOC_Os02g36974Os.3440.1.S2_at11/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_x_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36990Os.54283.1.S1_at11/112+22333669..22337631Dynein light chain type 1 family protein, expressed
LOC_Os02g37000Os.55640.1.S1_at11/112+22341197..22342316Mitochondrial prohibitin complex protein 1, putative, expressed
LOC_Os02g37010Os.18322.1.S1_at11/112+22344199..22346137flavin-containing monooxygenase family protein, putative, expressed
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009570cellular_componentchloroplast stroma
GO:0005515molecular_functionprotein binding
GO:0045309molecular_functionprotein phosphorylated amino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3440.1.S2_at--658--5491Chr02:22331263..22331287 (25 bp)
GAACATGATCGAATGCGTGCGCCCA
LOC_Os02g36974
Os.3440.1.S2_at--759--4651Chr02:22331277..22331301 (25 bp)
GCGTGCGCCCACAAACTAGAATAGT
LOC_Os02g36974
Os.3440.1.S2_at--1112--4571Chr02:22331377..22331401 (25 bp)
GCGCTCCCCATTTATGTTGTGCTAG
LOC_Os02g36974
Os.3440.1.S2_at--203--10091Chr02:22331399..22331423 (25 bp)
TAGGAAACCTTGCAGCTGACTCGCT
LOC_Os02g36974
Os.3440.1.S2_at--1114--7631Chr02:22331462..22331486 (25 bp)
GGGAGCCTCAGGGTGGAACCTTCAT
LOC_Os02g36974
Os.3440.1.S2_at--1104--8171Chr02:22331476..22331500 (25 bp)
GGAACCTTCATGTCACTTATTGGAT
LOC_Os02g36974
Os.3440.1.S2_at--369--1251Chr02:22331520..22331544 (25 bp)
AGTTGTGAGCCTTATCTCCAGAGTC
LOC_Os02g36974
Os.3440.1.S2_at--24--7731Chr02:22331580..22331604 (25 bp)
GGTTTCTTCGATGTAAATCCCGTTG
LOC_Os02g36974
Os.3440.1.S2_at--978--3031Chr02:22331595..22331619 (25 bp)
AATCCCGTTGTGTGCACGATGGTTC
LOC_Os02g36974
Os.3440.1.S2_at--599--6731Chr02:22331616..22331640 (25 bp)
GTTCTTGATTCACCACACATTGTTG
LOC_Os02g36974
Os.3440.1.S2_at--591--7631Chr02:22331751..22331775 (25 bp)
GGGACCCAAATGTTCACTGGCATCA
LOC_Os02g36974
Target Sequence 
GAACATGATCGAATGCGTGCGCCCACAAACTAGAATAGTGACGCTGCAAATGTGCTGTGGGTTATCGTTTCATTTTATAG
ATTGTAATGTCTCGTGATTTGTCGGAAACAGGAGGCGCTCCCCATTTATGTTGTGCTAGGAAACCTTGCAGCTGACTCGC
TGCTTGGCTGGTGGATTCTCGAGCTGCACTTTCTTTGGGGGGAGCCTCAGGGTGGAACCTTCATGTCACTTATTGGATCG
ATTGTTTTCGGTATGTCAGTTGTGAGCCTTATCTCCAGAGTCCACAGTCCTGCCAAGTGCCCTGCTTGAGTGTTTTTGGT
TTCTTCGATGTAAATCCCGTTGTGTGCACGATGGTTCTTGATTCACCACACATTGTTGTCTACATNGCCAAAACGTATGC
TTCAAGTGCCCAAAAGGCCGAAGCGGTCCGAGAAACATTATTCTGTCAGGTATGTGTGATAAGCGGTTTCATATGCNACA
ATGCTGTAGGGACCCAAATGTTCACTGGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3440.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis