Browse Element(s) Details


Os.34436.1.S1_at

Description gb:AK071422.1
DB_XREF= gi:32981445
TID=Os.34436.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0552C05.17 (P0552C05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023094M01, full insert sequence.
FL= gb:AK071422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g200001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19970OsAffx.21941.1.S1_s_at11/111+11347388..11353401Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g19980OsAffx.11125.1.S1_at11/111+11354930..11356720hypothetical protein
LOC_Os01g19990Os.28809.1.S1_at11/111+11361133..11362122expressed protein
LOC_Os01g20000Os.34436.1.S1_at1/111+11363794..11364042hypothetical protein
LOC_Os01g20010NANA1+11366371..11366637hypothetical protein
LOC_Os01g20020OsAffx.11126.1.S1_at9/111+11369571..11371214hypothetical protein
LOC_Os01g20030NANA1+11375766..11376503expressed protein
LOC_Os01g20040OsAffx.22927.2.S1_x_at11/111+11379923..11380943retrotransposon protein, putative, unclassified
LOC_Os01g20040OsAffx.22927.2.S1_at11/111+11379923..11380943retrotransposon protein, putative, unclassified
LOC_Os01g20050Os.53142.1.S1_at3/111+11382848..11384432retrotransposon protein, putative, unclassified
LOC_Os01g20050Os.23706.1.A1_x_at1/111+11382848..11384432retrotransposon protein, putative, unclassified
LOC_Os01g20060NANA1+11386231..11386698hypothetical protein
LOC_Os01g20070NANA1+11388213..11388554retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34436.1.S1_at--706--4691Chr01:11363819..11363843 (25 bp)
GCGGCATCCGCTGGTTCAAGCGCAA
LOC_Os01g20000
Os.34436.1.S1_at--591--9251Chr01:11363709..11363733 (25 bp)
TCCTCCTCGTCGAAGGTAATTTTTG
NONE
Os.34436.1.S1_at--435--2191Chr01:11363654..11363678 (25 bp)
ACACAGGGCCTTATTTAATCATGCA
NONE
Os.34436.1.S1_at--605--5031Chr01:11363632..11363656 (25 bp)
GCAGATTCGTGGTTGCGGGTTCCTA
NONE
Os.34436.1.S1_at--685--10631Chr01:11363620..11363644 (25 bp)
TTGCGGGTTCCTATTTTGTGATTAT
NONE
Os.34436.1.S1_at--1120--31Chr01:11363597..11363621 (25 bp)
ATTGATCAAACACCAGATGCTGCAA
NONE
Os.34436.1.S1_at--161--631Chr01:11363581..11363605 (25 bp)
ATGCTGCAAAGTGCATCACCTCTCA
NONE
Os.34436.1.S1_at--101--1751Chr01:11363564..11363588 (25 bp)
ACCTCTCATCGATCCATGCATGCAT
NONE
Os.34436.1.S1_at--1035--631Chr01:11363549..11363573 (25 bp)
ATGCATGCATGACGCCAGAATGAAT
NONE
Os.34436.1.S1_at--113--5271Chr01:11363532..11363556 (25 bp)
GAATGAATTTCTTCCTCGCAAAAAC
NONE
Os.34436.1.S1_at--1014--6411Chr01:11363464..11363488 (25 bp)
GATCTTCAATGTCTTGTTTGGGCGT
NONE
Target Sequence 
GCGGCATCCGCTGGTTCAAGCGCAAGTGCTCCGCCATCTTCCGCGCCTAGCGCTGATCCCTCCAAGAACAACGCCGCCAA
TGCCAACGCATACGCGCCTCGCCTCCCCTCTCCTCCTCGTCGAAGGTAATTTTTGAAAGAAAAAAAAAGAGAAGGAAAAA
GAAAAACACAGGGCCTTATTTAATCATGCAGATTCGTGGTTGCGGGTTCCTATTTTGTGATTATTGATCAAACACCAGAT
GCTGCAAAGTGCATCACCTCTCATCGATCCATGCATGCATGACGCCAGAATGAATTTCTTCCTCGCAAAAACAAAAGACC
GAATACTTCCGACGAATTGTCAAGATACTCATTGGGATCTTCAATGTCTTGTTTGGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis