Browse Element(s) Details


Os.34525.1.S1_x_at

Description gb:AK071035.1
DB_XREF= gi:32981058
TID=Os.34525.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.20 (P0046B10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078J12, full insert sequence.
FL= gb:AK071035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4272011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed
LOC_Os01g42720Os.34525.2.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.2.S1_at11/111+24626992..24628080expressed protein
LOC_Os01g42720OsAffx.11445.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42730Os.41283.1.S1_at8/111+24639449..24644008GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g42740Os.20364.1.S1_at1/111+24652185..24652514Ammonium transporter 2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34525.1.S1_x_at--1135--5791Chr01:24627192..24627323 (25 bp)
GACGCCAACCAGAGGAAATTCGCGG
LOC_Os01g42720
Os.34525.1.S1_x_at--284--7631Chr01:24627350..24627374 (25 bp)
GGGACCTACGCGTGCAGGCTCTGCA
LOC_Os01g42720
Os.34525.1.S1_x_at--1144--4791Chr01:24627381..24627405 (25 bp)
GCTCGACGATCGAGTGGTCTCCGCT
LOC_Os01g42720
Os.34525.1.S1_x_at--164--7751Chr01:24627415..24627439 (25 bp)
GGTGTTCGTCAACCCGTGCCTCTGC
LOC_Os01g42720
Os.34525.1.S1_x_at--21--9451Chr01:24627435..24627459 (25 bp)
TCTGCCCTACCTGTGACGGGACTAG
LOC_Os01g42720
Os.34525.1.S1_x_at--255--8691Chr01:24627446..24627587 (25 bp)
TGTGACGGGACTAGGGTGCAGCGCT
LOC_Os01g42720
Os.34525.1.S1_x_at--711--8631Chr01:24627660..24627775 (25 bp)
TGGGATTTCCGCACGGTGATTGAAT
LOC_Os01g42720
Os.34525.1.S1_x_at--181--6591Chr01:24627768..24627792 (25 bp)
GATTGAATTGGATGGTTTGTGTCGA
LOC_Os01g42720
Os.34525.1.S1_x_at--235--10771Chr01:24627784..24627808 (25 bp)
TTGTGTCGAGGAATTAGGCCTTTTT
LOC_Os01g42720
Os.34525.1.S1_x_at--621--4911Chr01:24627829..24627853 (25 bp)
GCTTGTAAGGAGGAATTTCTGGCCA
LOC_Os01g42720
Os.34525.1.S1_x_at--578--331Chr01:24627883..24627907 (25 bp)
ATAAAATGTGACTTTGATTTTCCCT
LOC_Os01g42720
Target Sequence 
GACGCCAACCAGAGGAAATTCGCGGCGCCGTGTGGCGCCTGCGAGGGGAAGGGGACCTACGCGTGCAGGCTCTGCAGGGG
CAGCTCGACGATCGAGTGGTCTCCGCTCCACGACCCGGTGTTCGTCAACCCGTGCCTCTGCCCTACCTGTGACGGGACTA
GGGTGCAGCGCTGCTTGAACTGCCTTGGAAAAGGCTACGCTTGAAGGGGCAATGCGTCCTTGCGTTTGGCTTATCGTTGG
CCACTGGGATTTCCGCACGGTGATTGAATTGGATGGTTTGTGTCGAGGAATTAGGCCTTTTTAGGGGAAGTTGAGAAATT
AGGCTTGTAAGGAGGAATTTCTGGCCAAAAACTAAAACCAAAGACCAACGTGTATAATAAAATGTGACTTTGATTTTCCC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34525.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis