Browse Element(s) Details


Os.34525.2.S1_at

Description gb:NM_192761.1
DB_XREF= gi:34912605
GEN=P0046B10.20
TID=Os.34525.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.20 (P0046B10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0046B10.20 (P0046B10.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4272011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed
LOC_Os01g42720Os.34525.2.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.2.S1_at11/111+24626992..24628080expressed protein
LOC_Os01g42720OsAffx.11445.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42730Os.41283.1.S1_at8/111+24639449..24644008GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g42740Os.20364.1.S1_at1/111+24652185..24652514Ammonium transporter 2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34525.2.S1_at--350--8891Chr01:24627448..24627472 (25 bp)
TGACGGGACTAGGTTGGCCGTCCTT
LOC_Os01g42720
Os.34525.2.S1_at--314--3691Chr01:24627456..24627480 (25 bp)
CTAGGTTGGCCGTCCTTTGCGGAGA
LOC_Os01g42720
Os.34525.2.S1_at--641--8451Chr01:24627462..24627486 (25 bp)
TGGCCGTCCTTTGCGGAGATTTCCT
LOC_Os01g42720
Os.34525.2.S1_at--75--7271Chr01:24627467..24627491 (25 bp)
GTCCTTTGCGGAGATTTCCTTGACC
LOC_Os01g42720
Os.34525.2.S1_at--142--10291Chr01:24627471..24627495 (25 bp)
TTTGCGGAGATTTCCTTGACCTTTG
LOC_Os01g42720
Os.34525.2.S1_at--1054--4671Chr01:24627474..24627498 (25 bp)
GCGGAGATTTCCTTGACCTTTGGTC
LOC_Os01g42720
Os.34525.2.S1_at--1000--8031Chr01:24627476..24627500 (25 bp)
GGAGATTTCCTTGACCTTTGGTCAC
LOC_Os01g42720
Os.34525.2.S1_at--213--1251Chr01:24627478..24627502 (25 bp)
AGATTTCCTTGACCTTTGGTCACGC
LOC_Os01g42720
Os.34525.2.S1_at--760--5851Chr01:24627487..24627511 (25 bp)
TGACCTTTGGTCACGCCCCTTTGAA
LOC_Os01g42720
Os.34525.2.S1_at--433--8591Chr01:24627494..24627518 (25 bp)
TGGTCACGCCCCTTTGAATTGCTGT
LOC_Os01g42720
Os.34525.2.S1_at--36--1831Chr01:24627499..24627523 (25 bp)
ACGCCCCTTTGAATTGCTGTGCTGC
LOC_Os01g42720
Target Sequence 
TGACGGGACTAGGTTGGCCGTCCTTTGCGGAGATTTCCTTGACCTTTGGTCACGCCCCTTTGAATTGCTGTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34525.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis