Browse Element(s) Details


Os.34600.2.S1_x_at

Description gb:NM_192696.1
DB_XREF= gi:34912475
GEN=P0704D04.12
TID=Os.34600.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0704D04.12 (P0704D04.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0704D04.12 (P0704D04.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4216011/11hypothetical protein
LOC_Os01g421504/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42100OsAffx.21382.1.S1_at11/111+24202161..24203062hypothetical protein
LOC_Os01g42110Os.33697.1.S1_at1/111+24204472..24207094nodulin MtN3 protein, putative
LOC_Os01g42120Os.47998.1.S1_at10/111+24208748..24211054expressed protein
LOC_Os01g42130NANA1+24212148..24212573expressed protein
LOC_Os01g42140OsAffx.21381.1.S1_s_at11/111+24213693..24215035expressed protein
LOC_Os01g42150Os.13930.1.S1_at11/111+24216974..24217559expressed protein
LOC_Os01g42150Os.34600.2.S1_x_at4/111+24216974..24217559expressed protein
LOC_Os01g42160Os.34600.2.S1_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42160Os.34600.2.S1_x_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42170NANA1+24230316..24235220Zinc knuckle family protein
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34600.2.S1_x_at--104--8191Chr01:24224153..24224177 (25 bp)
GGAAGCCTTGCCATCGTGGTACATG
LOC_Os01g42160
Os.34600.2.S1_x_at--86--3551Chr01:24224006..24224166 (25 bp)
CATCGTGGTACATGGTGGCCGCACA
LOC_Os01g42160
Os.34600.2.S1_x_at--179--811Chr01:24223995..24224017 (23 bp)
ATGGTGGCCGCACACACGCCGTCGT
LOC_Os01g42160
Os.34600.2.S1_x_at--552--5871Chr01:24223963..24223987 (25 bp)
GAGCCGGCGAAGAAATCAGCTGCTG
LOC_Os01g42160
Os.34600.2.S1_x_at--1047--9411Chr01:24223929..24223953 (25 bp)
TCGTGCAGCCGGAGATGGACCCGAT
LOC_Os01g42160
Os.34600.2.S1_x_at--284--6031Chr01:24223918..24223942 (25 bp)
GAGATGGACCCGATCACCATCTGCA
LOC_Os01g42160
Os.34600.2.S1_x_at--1119--10592Chr01:24223882..24223906 (25 bp)
TTCTGCATCCCGGAGGCGTGGAGCT
LOC_Os01g42160
Os.34600.2.S1_x_at--362--4672Chr01:24223867..24223891 (25 bp)
GCGTGGAGCTCCTGCTACAGGTGCA
LOC_Os01g42160
Os.34600.2.S1_x_at--294--4852Chr01:24223854..24223878 (25 bp)
GCTACAGGTGCATCGTGAAGCCCGA
LOC_Os01g42160
Os.34600.2.S1_x_at--962--7772Chr01:24223848..24223872 (25 bp)
GGTGCATCGTGAAGCCCGACGACAA
LOC_Os01g42160
Os.34600.2.S1_x_at--741--4311Chr01:24223818..24223842 (25 bp)
CCTTCCGAACCATCGACGAGTGTAA
LOC_Os01g42160
Target Sequence 
GGAAGCCTTGCCATCGTGGTACATGGTGGCCGCACACACGCCGTCGTCGTCGTCGAGCCGGCGAAGAAATCAGCTGCTGG
TGGCGGCGTCGTGCAGCCGGAGATGGACCCGATCACCATCTGCAGCCCGTCCAACTTCTGCATCCCGGAGGCGTGGAGCT
CCTGCTACAGGTGCATCGTGAAGCCCGACGACAACTCGCCCTTCCGAACCATCGACGAGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34600.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis