Browse Element(s) Details


Os.34626.1.S1_a_at

Description gb:AK059147.1
DB_XREF= gi:32969165
TID=Os.34626.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0009C08.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-B02, full insert sequence.
FL= gb:AK059147.1 gb:AK069535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0149010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01420Os.18484.1.S1_at5/113+274095..276245expressed protein
LOC_Os03g01430OsAffx.24934.1.S1_at11/113+280283..281740hypothetical protein
LOC_Os03g01450OsAffx.24935.1.S1_at7/113+287418..288747hypothetical protein
LOC_Os03g01460OsAffx.22275.1.S1_at11/113+290232..291020hypothetical protein
LOC_Os03g01470Os.43909.1.S1_at11/113+292151..293666expressed protein
LOC_Os03g01480OsAffx.24934.1.S1_at11/113+294441..295900hypothetical protein
LOC_Os03g01490Os.34626.1.S1_a_at10/113+300759..301988expressed protein
LOC_Os03g01500OsAffx.10059.1.S1_at11/113+303205..304327hypothetical protein
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed
LOC_Os03g01540Os.35561.4.S1_x_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01540Os.35561.3.S1_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01550Os.35561.1.S1_x_at11/113+326776..330635expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34626.1.S1_a_at--303--811Chr03:301504..301528 (25 bp)
ATGGTGTTGGCACCTACTGCCTGAA
LOC_Os03g01490
Os.34626.1.S1_a_at--453--6871Chr03:301616..301640 (25 bp)
GTTTGGCTTCAGCTCCGATGAGTCA
LOC_Os03g01490
Os.34626.1.S1_a_at--1045--6291Chr03:301632..301656 (25 bp)
GATGAGTCACCGCACTACTTGGCTG
LOC_Os03g01490
Os.34626.1.S1_a_at--341--9311Chr03:301680..301704 (25 bp)
TCCCAGCCACAGTTAGTGGGTCGTT
LOC_Os03g01490
Os.34626.1.S1_a_at--42--6191Chr03:301707..301731 (25 bp)
GAGGAGCTTTACCTGCCAGAGGATT
LOC_Os03g01490
Os.34626.1.S1_a_at--361--8171Chr03:301736..301760 (25 bp)
GGAATGCAAAAACCCTCAACTTGTC
LOC_Os03g01490
Os.34626.1.S1_a_at--311--2231Chr03:301788..301812 (25 bp)
ACAAGGTTCTTCCACTCTAGGAGTC
LOC_Os03g01490
Os.34626.1.S1_a_at--426--5851Chr03:301839..301863 (25 bp)
GACCAGAATGTTGCTGTCTTTACCG
LOC_Os03g01490
Os.34626.1.S1_a_at--1038--7351Chr03:301872..301896 (25 bp)
GTGAAGCCATGTTTCCAGGATGCCA
LOC_Os03g01490
Os.34626.1.S1_a_at--722--1151Chr03:301954..301978 (25 bp)
AGTCTAATCACACTACCATCGATGC
LOC_Os03g01490
Os.34626.1.S1_a_at--823--1711Chr03:301968..301992 (25 bp)
ACCATCGATGCTGTGTTCTGAACAT
NONE
Target Sequence 
ATGGTGTTGGCACCTACTGCCTGAACACGGCAAGCCACACATGGATAAAAGTCGGTAATTGGACCCTACCCTTCCATGGC
AGGGTTGAGTATGTGCCTGAGTTCAACCTCTGGTTTGGCTTCAGCTCCGATGAGTCACCGCACTACTTGGCTGCTTCTAA
CCTCTCTGCCATGGACTCCCAGCCACAGTTAGTGGGTCGTTGGGAGGAGCTTTACCTGCCAGAGGATTTGAAGGAATGCA
AAAACCCTCAACTTGTCAACCTCGGCTCTGGCAGGTTCTGCATCACAAGGTTCTTCCACTCTAGGAGTCACAACAGTGAC
TCTCGGGGTGATGTTGACCAGAATGTTGCTGTCTTTACCGGTGTGGAGGTGAAGCCATGTTTCCAGGATGCCAATGGCGG
CAGTGGGAAAGTGGAACTCCAAATGATCCCACACAAATCATTATTTCACAAGTCTAATCACACTACCATCGATGCTGTGT
TCTGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34626.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis