Browse Element(s) Details


Os.34746.2.S1_x_at

Description gb:NM_183903.1
DB_XREF= gi:34894933
GEN=B1158F07.16
TID=Os.34746.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1158F07.21 (B1158F07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1158F07.16 (B1158F07.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2337011/11hypothetical protein
LOC_Os01g234404/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23340OsAffx.10659.2.S1_at10/111+13096564..13098440hypothetical protein
LOC_Os01g23340OsAffx.1436.1.S1_x_at2/111+13096564..13098440hypothetical protein
LOC_Os01g23350OsAffx.2062.1.S1_at11/111+13112523..13113680hypothetical protein
LOC_Os01g23360OsAffx.23351.2.S1_at11/111+13115904..13118630hypothetical protein
LOC_Os01g23360OsAffx.23351.2.S1_x_at11/111+13115904..13118630hypothetical protein
LOC_Os01g23370Os.34746.2.S1_x_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23370Os.34746.2.S1_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23380Os.35285.1.S1_at11/111+13124419..13127422NB-ARC domain containing protein, expressed
LOC_Os01g23390OsAffx.11169.1.S1_at10/111+13127700..13128140hypothetical protein
LOC_Os01g23400NANA1+13129132..13129506hypothetical protein
LOC_Os01g23410NANA1+13131768..13134094hAT family dimerisation domain containing protein
LOC_Os01g23420OsAffx.13286.1.S1_at5/111+13138670..13141998Transposable element protein, putative, MuDR
LOC_Os01g23420OsAffx.13287.1.S1_at1/111+13138670..13141998Transposable element protein, putative, MuDR
LOC_Os01g23430OsAffx.25327.1.S1_at11/111+13146859..13151686hypothetical protein
LOC_Os01g23430OsAffx.25327.2.S1_at2/111+13146859..13151686hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34746.2.S1_x_at--165--9252Chr01:13122912..13122936 (25 bp)
TCCCGAAAGAGCTGGGCGTCCGACG
LOC_Os01g23370
Os.34746.2.S1_x_at--275--9332Chr01:13122985..13123009 (25 bp)
TCGCCACGAGGCTCTACGAGATGAG
LOC_Os01g23370
Os.34746.2.S1_x_at--807--6032Chr01:13123002..13123026 (25 bp)
GAGATGAGATGCTCGCTGCACGCTT
LOC_Os01g23370
Os.34746.2.S1_x_at--1087--3931Chr01:13123042..13123066 (25 bp)
CGGCATCATCGTCGGACATGGCCGC
LOC_Os01g23370
Os.34746.2.S1_x_at--192--8131Chr01:13123127..13123151 (25 bp)
GGACATCGCCACGTGGACCGAGAAA
LOC_Os01g23370
Os.34746.2.S1_x_at--1159--531Chr01:13123131..13123155 (25 bp)
ATCGCCACGTGGACCGAGAAACGGT
LOC_Os01g23370
Os.34746.2.S1_x_at--129--2371Chr01:13123150..13123208 (25 bp)
AACGGTACAGGGAGGACAGCGCCGC
LOC_Os01g23370
Os.34746.2.S1_x_at--247--4171Chr01:13123312..13123336 (25 bp)
CGCCTTGCGGAGGAGTACACGACCG
LOC_Os01g23370
Os.34746.2.S1_x_at--413--3991Chr01:13123364..13123388 (25 bp)
CGTGGCTGTTCCTGGCGGATTTCTG
LOC_Os01g23370
Os.34746.2.S1_x_at--494--6531Chr01:13123381..13123405 (25 bp)
GATTTCTGGTCGGAGATGATGCTCT
LOC_Os01g23370
Os.34746.2.S1_x_at--172--9412Chr01:13123466..13123490 (25 bp)
TCGTCACGCTGCTCTGGGCGCTGCT
LOC_Os01g23370
Target Sequence 
TCCCGAAAGAGCTGGGCGTCCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGCACGTCGCCAC
GAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCGTCTCCGACGCCGTCGGCATCATCGTCGGACATGGCCGCCGCGT
GCCACCTCTCCAACTACTGCGCGTACCTGGCGTCGGCCGCGCCGGAGCTGCTGCCGGACATCGCCACGTGGACCGAGAAA
CGGTACAGGGAGGACAGCGCCGCCGGTGAGACGACGACGGCGCAGCAGAGGTACGAGCGGCTCGTGGCGACGCTGAGCGC
CGGCGCGCGCGACAAGGCGCTGCGTCGCGGCGCGGAGATCGCGCGCCGCCTTGCGGAGGAGTACACGACCGCCGCCGAGG
ACGACGACGAGGCGTCGGCGTGGCTGTTCCTGGCGGATTTCTGGTCGGAGATGATGCTCTACGTGGCGCCGTCGGAGAAC
GTCAAGGGGCACGTGGAGGCCATGGCGCGCGGCGGCGAGTTCGTCACGCTGCTCTGGGCGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34746.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis