Browse Element(s) Details


Os.34808.1.S1_at

Description gb:AK070064.1
DB_XREF= gi:32980088
TID=Os.34808.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative type IIB calcium ATPase (P0504E02.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041B03, full insert sequence.
FL= gb:AK070064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7124011/11Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71200Os.33686.1.S1_at11/111+41520199..41525752Ribonucleoprotein, putative, expressed
LOC_Os01g71210Os.51276.1.S1_x_at11/111+41528408..41529133expressed protein
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os01g71230Os.12071.1.S1_at11/111+41541160..41543918Nascent polypeptide-associated complex alpha subunit-like protein 3, putative, expressed
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
LOC_Os01g71250Os.28979.2.S1_x_at11/111+41554233..41556655expressed protein
LOC_Os01g71250Os.28979.1.S1_at11/111+41554233..41556655expressed protein
LOC_Os01g71256Os.33291.1.S1_a_at10/111+41557703..41562435expressed protein
LOC_Os01g71262Os.55362.1.S1_at11/111+41563261..41565644expressed protein
LOC_Os01g71270Os.48006.1.S1_at11/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71270Os.12402.2.S1_x_at1/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71280Os.11390.1.S1_at10/111+41572437..41576747Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g71300Os.57405.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.57001.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.50480.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.18519.1.S1_at10/111+41578082..41599153Esterase D, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005773cellular_componentvacuole
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0005262molecular_functioncalcium channel activity
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
GO:0015085molecular_functioncalcium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34808.1.S1_at--1139--10511Chr01:41553607..41553631 (25 bp)
TTCAGCAGCTGGATCTTCTCGGCGG
LOC_Os01g71240
Os.34808.1.S1_at--79--8631Chr01:41553665..41553689 (25 bp)
TGGTGGAGCTCCTTGGGACTTTCGC
LOC_Os01g71240
Os.34808.1.S1_at--892--2471Chr01:41553691..41553715 (25 bp)
AACACGGTGCATCTCAGCGGGAAGC
LOC_Os01g71240
Os.34808.1.S1_at--783--9611Chr01:41553755..41553779 (25 bp)
TCATCGGCGCCATCTTGAAGTGCAT
LOC_Os01g71240
Os.34808.1.S1_at--1006--411Chr01:41553766..41553790 (25 bp)
ATCTTGAAGTGCATCCCGGTCGAAT
LOC_Os01g71240
Os.34808.1.S1_at--45--1851Chr01:41553800..41553824 (25 bp)
ACGCTTCTGATCGTCACGACGGATA
LOC_Os01g71240
Os.34808.1.S1_at--923--4531Chr01:41553842..41553866 (25 bp)
GCCCGAGTGCGGTTTGATTTTTGCA
LOC_Os01g71240
Os.34808.1.S1_at--168--3531Chr01:41553983..41554007 (25 bp)
CATCGTAGTTTTAACTCCTCCAAAG
LOC_Os01g71240
Os.34808.1.S1_at--773--6071Chr01:41554007..41554031 (25 bp)
GAGTAGGTTTTGTCATTGCGTCTTC
LOC_Os01g71240
Os.34808.1.S1_at--339--10371Chr01:41554032..41554056 (25 bp)
TTTTTTCCCCTCAGATTTGGTAGTG
LOC_Os01g71240
Os.34808.1.S1_at--917--5911Chr01:41554123..41554147 (25 bp)
GAGCATGTACTTGCCATTTCGTTTT
LOC_Os01g71240
Target Sequence 
TTCAGCAGCTGGATCTTCTCGGCGGTGGTCGGCGTCACGGCGGGGTTCCAGGTGATCATGGTGGAGCTCCTTGGGACTTT
CGCCAACACGGTGCATCTCAGCGGGAAGCTGTGGCTGACGAGCNTGCTGATCGGGTCGGTCGGCTTGGTCATCGGCGCCA
TCTTGAAGTGCATCCCGGTCGAATCCGGCAGCGACGCTTCTGATCGTCACGACGGATACCGGNCGATCCCCACCGGCCCG
AGTGCGGTTTGATTTTTGCAGGCNTTTTGATCATCGNTTTCTTCATAAANGAAGGAGATGAGTTTGCNTGCNAACTTCNT
ANTTTAACTCAGNNNTTTTTTTTTCCTCCCGAACGGAAGACATTNNNNTTTTCACACAAACATCGTAGTTTTAACTCCTC
CAAAGAGTAGGTTTTGTCATTGCGTCTTCTTTTTTCCCCTCAGATTTGGTAGTGATAATAAGTTGTCATTGTTTTGATCC
AAGGGATAGAATTCAGTTAGACAAAATTGAACTATAACAAGAGCATGTACTTGCCATTTCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis