Browse Element(s) Details


Os.34819.2.S1_x_at

Description gb:AK061089.1
DB_XREF= gi:32971107
TID=Os.34819.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1723_B06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-G11, full insert sequence.
FL= gb:AK061089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g224948/11expressed protein
LOC_Os01g541902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22460OsAffx.22631.1.S1_at11/117+12627098..12627685hypothetical protein
LOC_Os07g22470OsAffx.21042.1.S1_at11/117+12630712..12632412hypothetical protein
LOC_Os07g22480OsAffx.22629.1.S1_at11/117+12639753..12644850hypothetical protein
LOC_Os07g22480OsAffx.30013.5.S1_x_at1/117+12639753..12644850hypothetical protein
LOC_Os07g22494Os.33350.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494OsAffx.5404.1.S1_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_s_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_x_at8/117+12651670..12654761expressed protein
LOC_Os07g22494Os.33350.1.S1_x_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_s_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_x_at2/117+12651670..12654761expressed protein
LOC_Os07g22494Os.42141.1.S1_x_at1/117+12651670..12654761expressed protein
LOC_Os07g22510Os.30411.1.S1_at11/117+12663580..12664674expressed protein
LOC_Os07g22520OsAffx.22628.1.S1_at11/117+12666279..12668588hypothetical protein
LOC_Os07g22534Os.30694.3.S1_x_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.1.S1_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.2.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534OsAffx.22627.1.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.7923.1.S1_x_at6/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.32421.1.A1_at1/117+12674396..12682626WD-repeat protein 18, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34819.2.S1_x_at--890--4431Chr07:12653325..12653349 (25 bp)
GCCATCATAGGCATCACCTCAAAGA
LOC_Os07g22494
Os.34819.2.S1_x_at--969--1731Chr07:12653310..12653334 (25 bp)
ACCTCAAAGACATTCTACTCACTGC
LOC_Os07g22494
Os.34819.2.S1_x_at--649--8091Chr07:12653277..12653301 (25 bp)
GGAGCCATTTCTTTCTCTCAAGTTG
LOC_Os07g22494
Os.34819.2.S1_x_at--225--3591Chr07:12653272..12653296 (25 bp)
CATTTCTTTCTCTCAAGTTGGCATG
LOC_Os07g22494
Os.34819.2.S1_x_at--160--9812Chr01:31493960..31493984 (25 bp)
TAACAGGCCCAACTTAATTATCATG
LOC_Os01g54190
Os.34819.2.S1_x_at--227--351Chr07:12653191..12653215 (25 bp)
ATAAGCCACAGCAATTTTACCCACC
LOC_Os07g22494
Os.34819.2.S1_x_at--972--10333Chr01:31494385..31494409 (25 bp)
TTTACCCACCTAAGGTCACTCTGTG
LOC_Os01g54190
Os.34819.2.S1_x_at--324--3191Chr07:12653099..12653123 (25 bp)
CAATCAATTGGTGCTGTCTAGTAGG
LOC_Os07g22494
Os.34819.2.S1_x_at--479--131Chr07:12651376..12651400 (25 bp)
ATTCAAATTTCATCTCAGTTGTAGA
NONE
Os.34819.2.S1_x_at--645--6271Chr07:12651353..12651377 (25 bp)
GATGTCTATGAGATTGGCATTGCTA
NONE
Os.34819.2.S1_x_at--325--10871Chr07:12651340..12651364 (25 bp)
TTGGCATTGCTATTGTAATTCACAT
NONE
Target Sequence 
GCCATCATAGGCATCACCTCAAAGACATTCTACTCACTGCAAAGCCAGGGAGCCATTTCTTTCTCTCAAGTTGGCATGCG
TTCCTTTTNCTTAGTTAAATCATAAATTAACAGGCCCAACTTAATTATCATGGAATAAGCCACAGCAATTTTACCCACCT
AAGGTCACTCTGTGCATTNATTTCAGGACAATGACAAGCATTGGGATAGACAAGGCAGTAGATTCTCAATCAATTGGTGC
TGTCTAGTAGGTGAAGAGTGACACCGAANCAGGATTTGCAAGTCAACTGGCTCATCTTCATATTATTTGAGGTGTTGTCG
GACTGCCTGCAATGCCATTCGTCAACTCTTTTCTCGTTTCCCTACCTCCTTGGTTATCTAACCTTAAGAAGTAATATTCA
AATTTCATCTCAGTTGTAGATGTCTATGAGATTGGCATTGCTATTGTAATTCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34819.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis