Browse Element(s) Details


Os.34854.1.S1_at

Description gb:AK069881.1
DB_XREF= gi:32979905
TID=Os.34854.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035N07, full insert sequence.
FL= gb:AK069881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0805010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08000NANA11+4155148..4157123hypothetical protein
LOC_Os11g08009NANA11+4158502..4158585NA
LOC_Os11g08020OsAffx.30872.1.S1_s_at11/1111+4164096..4171065ankyrin repeat family protein, putative, expressed
LOC_Os11g08029NANA11+4174430..4175580NA
LOC_Os11g08040OsAffx.18739.1.S1_at11/1111+4178511..4179702hypothetical protein
LOC_Os11g08050OsAffx.18740.1.S1_at11/1111+4180094..4187936hypothetical protein
LOC_Os11g08050Os.34854.1.S1_at10/1111+4180094..4187936hypothetical protein
LOC_Os11g08050OsAffx.32294.1.S1_at1/1111+4180094..4187936hypothetical protein
LOC_Os11g08060Os.33601.3.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060OsAffx.20631.1.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060Os.49936.2.A1_at1/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08070OsAffx.30873.1.S1_at11/1111+4208071..4209931hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34854.1.S1_at--683--8831NONE
TGATCAAGTCAATGACGTCGTCCTC
NONE
Os.34854.1.S1_at--842--111Chr11:4186349..4186373 (25 bp)
ATTCACAATTGACGACACCCACTGC
LOC_Os11g08050
Os.34854.1.S1_at--185--1992Chr11:4186329..4186353 (25 bp)
ACTGCGGCAACTCCATGCATGGTTT
LOC_Os11g08050
Os.34854.1.S1_at--435--4332Chr11:4186317..4186341 (25 bp)
CCATGCATGGTTTCGTTTCGGCAAG
LOC_Os11g08050
Os.34854.1.S1_at--794--6211Chr11:4186246..4186270 (25 bp)
GAGGCTGTACACATCGGTCTTGTCA
LOC_Os11g08050
Os.34854.1.S1_at--975--10811Chr11:4186227..4186251 (25 bp)
TTGTCACTCATCTTCTTGAACTGCA
LOC_Os11g08050
Os.34854.1.S1_at--356--5471Chr11:4186210..4186234 (25 bp)
GAACTGCACATTATGCCATCAGAAA
LOC_Os11g08050
Os.34854.1.S1_at--209--6792Chr11:4186183..4186207 (25 bp)
GTTAGTGGCACTATCAGTATCATGT
LOC_Os11g08050
Os.34854.1.S1_at--195--2851Chr11:4186033..4186057 (25 bp)
AAGTCTGCCATTTACTTTATCCGCT
LOC_Os11g08050
Os.34854.1.S1_at--568--10431Chr11:4186017..4186041 (25 bp)
TTATCCGCTGTTCACATATTGGCCA
LOC_Os11g08050
Os.34854.1.S1_at--630--9851Chr11:4185949..4185973 (25 bp)
TACTGAAATATACAGGCCCGGCCCT
LOC_Os11g08050
Target Sequence 
TGATCAAGTCAATGACGTCGTCCTCTCGGCGGTGATGGCGAGGGCAACCGGCTCGTTCGCCACTTCATCACAAATTCACA
ATTGACGACACCCACTGCGGCAACTCCATGCATGGTTTCGTTTCGGCAAGAAACTTAATTACCGGTAAGGAGATTGAGGT
TGAGGATGATGACACGGAGGCTGTACACATCGGTCTTGTCACTCATCTTCTTGAACTGCACATTATGCCATCAGAAAATG
TTAGTGGCACTATCAGTATCATGTATATAGATGCAGATTCTCAGTTTATATAGATGAAACCCAAGAAATGTAGCGTGAAT
TTGGAGCAAATTTGTTCAGAGAGACAGAAAGGTACTAGATAATATTAGTAAAGCATTGTTGTTAAACAAAAGTCTGCCAT
TTACTTTATCCGCTGTTCACATATTGGCCAGAATATGATATGTTAATTTGTTCAACTGAACTTGACAGTCTTTTACTGAA
ATATACAGGCCCGGCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis