Browse Element(s) Details


Os.34873.1.S1_at

Description gb:AK069789.1
DB_XREF= gi:32979813
TID=Os.34873.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 1, P0431G06.11 (OJ1477_F01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034O04, full insert sequence.
FL= gb:AK069789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4651011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46490Os.11460.1.S1_at11/117+27751108..27755611Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os07g46500Os.11488.1.S1_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46500Os.44618.1.S1_s_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46510Os.34873.1.S1_at11/117+27779362..27780298expressed protein
LOC_Os07g46520OsAffx.28932.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_x_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46530OsAffx.16734.1.S1_at11/117+27788969..27789283hypothetical protein
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34873.1.S1_at--756--8751Chr07:27779786..27779810 (25 bp)
TGATCAAGGTCACGGAGGAGTTCAT
LOC_Os07g46510
Os.34873.1.S1_at--181--991Chr07:27779801..27779825 (25 bp)
AGGAGTTCATCGTCAAGGCCGTCAC
LOC_Os07g46510
Os.34873.1.S1_at--1075--10691Chr07:27780049..27780073 (25 bp)
TTGCTCGGGTTGGACAAGGGAATCA
LOC_Os07g46510
Os.34873.1.S1_at--713--5491Chr07:27780087..27780111 (25 bp)
GAAAATTTTCGTCTAATCCTCTCTT
LOC_Os07g46510
Os.34873.1.S1_at--1100--9751Chr07:27780100..27780124 (25 bp)
TAATCCTCTCTTCTAATTGGCTGCT
LOC_Os07g46510
Os.34873.1.S1_at--1131--9731Chr07:27780113..27780137 (25 bp)
TAATTGGCTGCTGCTAGTTTTGCTT
LOC_Os07g46510
Os.34873.1.S1_at--863--4751Chr07:27780122..27780146 (25 bp)
GCTGCTAGTTTTGCTTTGAAGATTG
LOC_Os07g46510
Os.34873.1.S1_at--1149--10831Chr07:27780190..27780214 (25 bp)
TTGGATGGGTATCTCTTGTTTGTTT
LOC_Os07g46510
Os.34873.1.S1_at--316--171Chr07:27780223..27780247 (25 bp)
ATTTTGTACATCCAGACCGATCTCT
LOC_Os07g46510
Os.34873.1.S1_at--195--1371Chr07:27780236..27780260 (25 bp)
AGACCGATCTCTGTTTGTAAGTAAG
LOC_Os07g46510
Os.34873.1.S1_at--67--10351Chr07:27780269..27780293 (25 bp)
TTTACCGTCAAATGGCAAACAGATT
LOC_Os07g46510
Target Sequence 
TGATCAAGGTCACGGAGGAGTTCATCGTCAAGGCCGTCACGGGGAGGCGGCCACCGGCTGGCGGCGGCGGCGAGGGGGAG
GACGCGCATGGGGCGGCGGCGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACGAGCAGCTGGTGGGCGCGGCGAGGGG
GCGGCCGTGGTCGCCGCGGCTGGAGACGATCAAGGAGCGGAATGGGCGGCGGAGGGTGGTCGACGTCGTCGTCAGCCCCA
CCGGCAGGCTGTCTCCGGTGAGGTTGCTCGGGTTGGACAAGGGAATCAAGTAGACATGCATGAAAATTTTCGTCTAATCC
TCTCTTCTAATTGGCTGCTGCTAGTTTTGCTTTGAAGATTGAAGCGATTTTTGGTTGGAAATTTGGATTAGATGTACATA
TGTTTTGGATGGGTATCTCTTGTTTGTTTCTACAAGAATTTTGTACATCCAGACCGATCTCTGTTTGTAAGTAAGGTAAA
TGATTTACCGTCAAATGGCAAACAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis