Browse Element(s) Details


Os.34984.1.A1_at

Description gb:AK069424.1
DB_XREF= gi:32979448
TID=Os.34984.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MAP kinase (P0510C12.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019B07, full insert sequence.
FL= gb:AK069424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4562011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45590NANA1+26219952..26226107transposon protein, putative, unclassified
LOC_Os01g45600OsAffx.9239.1.S1_at7/111+26234822..26235079hypothetical protein
LOC_Os01g45620Os.34984.3.S1_x_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45620Os.34984.1.A1_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45624Os.34984.2.S1_at11/111+26250302..26250997Oleosin family protein, expressed
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34984.1.A1_at--155--6891Chr01:26244777..26244801 (25 bp)
GTATCTCTTACTGTACAGGTGATCA
LOC_Os01g45620
Os.34984.1.A1_at--586--6451Chr01:26244757..26244781 (25 bp)
GATCAATCCATATAGCAGCACGTAG
LOC_Os01g45620
Os.34984.1.A1_at--844--9771Chr01:26244688..26244712 (25 bp)
TAAGTAGCCACAGTTTTTCTCGGCT
LOC_Os01g45620
Os.34984.1.A1_at--533--9451Chr01:26244669..26244693 (25 bp)
TCGGCTCCTTGTTGGGATCCATGTT
LOC_Os01g45620
Os.34984.1.A1_at--828--3511Chr01:26244650..26244674 (25 bp)
CATGTTGTGTTGAAATCTCTCCCCT
LOC_Os01g45620
Os.34984.1.A1_at--772--3051Chr01:26244637..26244661 (25 bp)
AATCTCTCCCCTGATTTTTTCGAGG
LOC_Os01g45620
Os.34984.1.A1_at--1111--3651Chr01:26244595..26244619 (25 bp)
CTTCAGCTCCTGATTTTAGTCGATG
LOC_Os01g45620
Os.34984.1.A1_at--455--10351Chr01:26244581..26244605 (25 bp)
TTTAGTCGATGGATTTCACTGTCAC
LOC_Os01g45620
Os.34984.1.A1_at--558--6531Chr01:26244570..26244594 (25 bp)
GATTTCACTGTCACCCTATACTTTA
LOC_Os01g45620
Os.34984.1.A1_at--724--1791Chr01:26244558..26244582 (25 bp)
ACCCTATACTTTATTCTTAGCCGAG
LOC_Os01g45620
Os.34984.1.A1_at--157--4511Chr01:26244539..26244563 (25 bp)
GCCGAGCATAGGAGACTTAGTCACT
LOC_Os01g45620
Target Sequence 
GTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAA
TTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTT
CGAGGAGCTAAGANATATTTGACTTCAGCTCCTGATTTTAGTCGATGGATTTCACTGTCACCCTATACTTTATTCTTAGC
CGAGCATAGGAGACTTAGTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34984.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis