Browse Element(s) Details


Os.34984.3.S1_x_at

Description gb:NM_192298.1
DB_XREF= gi:34911679
GEN=P0510C12.30
TID=Os.34984.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34984 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative MAP kinase (P0510C12.30), mRNA.
PROD=putative MAP kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4562011/11Protein kinase domain containing protein, expressed
LOC_Os05g501201/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45590NANA1+26219952..26226107transposon protein, putative, unclassified
LOC_Os01g45600OsAffx.9239.1.S1_at7/111+26234822..26235079hypothetical protein
LOC_Os01g45620Os.34984.3.S1_x_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45620Os.34984.1.A1_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45624Os.34984.2.S1_at11/111+26250302..26250997Oleosin family protein, expressed
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34984.3.S1_x_at--707--8312Chr05:28640532..28640552 (21 bp)
GGCTCTCCATTTGCTTGAACGGTTA
LOC_Os05g50120
Os.34984.3.S1_x_at--796--5451Chr01:26246829..26246853 (25 bp)
GAACGGTTACTTGCTTTTGATCCCA
LOC_Os01g45620
Os.34984.3.S1_x_at--799--4371Chr01:26246807..26246831 (25 bp)
CCAAGGATCGGCCAACTGCTGCAGA
LOC_Os01g45620
Os.34984.3.S1_x_at--60--6231Chr01:26246687..26246710 (24 bp)
GAGGCCTTAACAGATCCATACTTTA
LOC_Os01g45620
Os.34984.3.S1_x_at--700--8231Chr01:26246655..26246679 (25 bp)
GGCAAATTCGGAACGTGAACCCATA
LOC_Os01g45620
Os.34984.3.S1_x_at--58--3451Chr01:26246415..26246437 (23 bp)
CAGTCAAACTTTTTGTACCCCAGTG
LOC_Os01g45620
Os.34984.3.S1_x_at--1011--6311Chr01:26245701..26245725 (25 bp)
GATGAACCTGATCCAACTGCAGATT
LOC_Os01g45620
Os.34984.3.S1_x_at--1132--6231Chr01:26245626..26245650 (25 bp)
GATGGACTGAACAAGCCACTCTTAA
LOC_Os01g45620
Os.34984.3.S1_x_at--67--10511Chr01:26245605..26245629 (25 bp)
TTAAGTGCTCGTAACTTCCTGAAGA
LOC_Os01g45620
Os.34984.3.S1_x_at--890--1351Chr01:26245583..26245607 (25 bp)
AGAGCGAAAGCATCGGTGCTTCCCA
LOC_Os01g45620
Os.34984.3.S1_x_at--249--7331Chr01:26245568..26245592 (25 bp)
GTGCTTCCCAGTGTGTTGTCATAAA
LOC_Os01g45620
Target Sequence 
GGCTCTCCATTTGCTTGAACGGTTACTTGCTTTTGATCCCAAGGATCGGCCAACTGCTGCAGAGGCCTTAACAGATCCAT
ACTTTACTGGATTGGCAAATTCGGAACGTGAACCCATAGCACAACCCATCTCAAAACTCGAGTTTGAGTTTGAGAGAAGG
AAGCTAGCAAAAGATGATGTCCGGGAATTAATTTACAGAGAGGTACTGATATTAGAGTACCATCCTCAGATGATGCAGAA
ATATCTTCGTGGTGGGGATCAGTCAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAG
AAGAAAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCA
TCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTG
TGTTGTCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34984.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis