Browse Element(s) Details


Os.351.1.S1_at

Description gb:AK100257.1
DB_XREF= gi:32985466
TID=Os.351.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061N09, full insert sequence.
FL= gb:AK100257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5485010/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54820Os.27125.1.A1_at11/114+32381297..32384241Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os04g54830Os.36834.1.S1_at10/114+32386034..32389565expressed protein
LOC_Os04g54840Os.48809.1.S1_at10/114+32390816..32399859DNA-directed RNA polymerase, putative, expressed
LOC_Os04g54850Os.351.1.S1_at10/114+32406740..32410067Pectinesterase family protein, expressed
LOC_Os04g54860Os.53282.1.S1_at11/114+32413212..32414887Glutaredoxin family protein, expressed
LOC_Os04g54870Os.37660.1.S2_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54870Os.37660.1.S1_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54880Os.45774.1.S1_at11/114+32424435..32428388transposon protein, putative, unclassified
LOC_Os04g54890OsAffx.31018.2.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890OsAffx.31018.3.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890Os.50578.1.S1_x_at5/114+32429114..32433661hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042545biological_processcell wall modification
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.351.1.S1_at--1037--6071Chr04:32409618..32409642 (25 bp)
GAGTACGCCAACACCGGGCCAGGCG
LOC_Os04g54850
Os.351.1.S1_at--470--5751Chr04:32409662..32409686 (25 bp)
GACGTGGCCGGGATACCGCGTCATC
LOC_Os04g54850
Os.351.1.S1_at--21--3511Chr04:32409770..32409794 (25 bp)
CATGGGCTTCGTCAAATGATCGATC
LOC_Os04g54850
Os.351.1.S1_at--625--6391Chr04:32409787..32409811 (25 bp)
GATCGATCACGTATCATATGCCATC
LOC_Os04g54850
Os.351.1.S1_at--882--251Chr04:32409802..32409826 (25 bp)
ATATGCCATCATCACATCGAGTCTC
LOC_Os04g54850
Os.351.1.S1_at--19--6111Chr04:32409820..32409844 (25 bp)
GAGTCTCCACACTTAATTTGCTAGT
LOC_Os04g54850
Os.351.1.S1_at--829--10071Chr04:32409860..32409884 (25 bp)
TTGCGAGGAATTTTACGGTCAGGTA
LOC_Os04g54850
Os.351.1.S1_at--681--9411Chr04:32409878..32409902 (25 bp)
TCAGGTACCACCAGTTACGTTAACT
LOC_Os04g54850
Os.351.1.S1_at--687--10371NONE
TTTTTTGCCTCGTCAAGGCATTGAA
NONE
Os.351.1.S1_at--222--8291Chr04:32409937..32409961 (25 bp)
GGCATTGAAGCACACTTAGACAAGT
LOC_Os04g54850
Os.351.1.S1_at--995--351Chr04:32410030..32410054 (25 bp)
ATCAACTTACTATACACCAAGTGAG
LOC_Os04g54850
Target Sequence 
GAGTACGCCAACACCGGGCCAGGCGCCGGCACAAGCAAGAGGGTGACGTGGCCGGGATACCGCGTCATCGGCCAGGCCGA
GGCCACGCAGTTCACCGCCGGCGTCTTCATCGACGGCTTGACGTGGCTCAAGAACACCGCCACGCCCAACGTCATGGGCT
TCGTCAAATGATCGATCACGTATCATATGCCATCATCACATCGAGTCTCCACACTTAATTTGCTAGTATATATTTGTTTA
GTTTGCGAGGAATTTTACGGTCAGGTACCACCAGTTACGTTAACTCGTTGTGTANNNNACATTTTTTTTTGCCTCGTCAA
GGCATTGAAGCACACTTAGACAAGTGCNGTGTGTATTTAAGAGGAAATGTACATGTGGAGGATATGAAAAAGAATGTATT
ATGCATTTTAATTTATCAACTTACTATACACCAAGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis