Browse Element(s) Details

Os.35175.1.S1_at

Description

gb:AK060971.1
DB_XREF= gi:32970989
TID=Os.35175.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Rad51C protein (P0022F12.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D10, full insert sequence.
FL= gb:AK060971.1 gb:AK068701.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g39630	10/11	DNA repair protein RAD51 homolog 3, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g39590	OsAffx.23582.1.S1_x_at	11/11	1	+	22659374..22660089	hypothetical protein
LOC_Os01g39600	Os.45953.1.S1_at	5/11	1	+	22665028..22668325	Leucine Rich Repeat family protein, expressed
LOC_Os01g39620	OsAffx.23583.1.S1_at	11/11	1	+	22677947..22678461	hypothetical protein
LOC_Os01g39630	Os.35175.1.S1_at	10/11	1	+	22680274..22685252	DNA repair protein RAD51 homolog 3, putative, expressed
LOC_Os01g39640	OsAffx.21318.2.S1_at	11/11	1	+	22687743..22689153	hypothetical protein
LOC_Os01g39640	OsAffx.21318.1.S1_at	6/11	1	+	22687743..22689153	hypothetical protein
LOC_Os01g39650	OsAffx.23584.2.S1_at	10/11	1	+	22692354..22696241	Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650	OsAffx.23584.1.S1_x_at	9/11	1	+	22692354..22696241	Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650	OsAffx.23584.1.S1_at	7/11	1	+	22692354..22696241	Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660	Os.20602.2.S1_x_at	11/11	1	+	22698373..22700553	hAT family dimerisation domain containing protein
LOC_Os01g39670	OsAffx.9088.1.S1_at	11/11	1	+	22702422..22704154	F-box domain containing protein, expressed
LOC_Os01g39680	Os.49309.1.S1_at	11/11	1	+	22705906..22709710	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0000724	biological_process	double-strand break repair via homologous recombination
GO:0006281	biological_process	DNA repair
GO:0006302	biological_process	double-strand break repair
GO:0007126	biological_process	meiosis
GO:0007131	biological_process	meiotic recombination
GO:0007140	biological_process	male meiosis
GO:0007143	biological_process	female meiosis
GO:0016444	biological_process	somatic cell DNA recombination
GO:0000150	molecular_function	recombinase activity
GO:0003684	molecular_function	damaged DNA binding
GO:0003697	molecular_function	single-stranded DNA binding
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.35175.1.S1_at--206--981	1	NONE	TAACTTGGCGGTTGTCTTGTTGAAC	NONE
Os.35175.1.S1_at--344--121	1	Chr01:22682475..22682494 (20 bp)	AGTTAACTCTTGCTCTAGGTGACAG	LOC_Os01g39630
Os.35175.1.S1_at--880--375	1	Chr01:22680708..22680732 (25 bp)	CTCATGCACCAATCGACTAATTCTG	LOC_Os01g39630
Os.35175.1.S1_at--171--693	1	Chr01:22680663..22680687 (25 bp)	GTATGGATTCCTGGACAAGTCCCCT	LOC_Os01g39630
Os.35175.1.S1_at--829--461	1	Chr01:22680564..22680588 (25 bp)	GCGAGTCCGGGTAATGTAGCAATCT	LOC_Os01g39630
Os.35175.1.S1_at--103--1045	1	Chr01:22680524..22680548 (25 bp)	TTACCATTAGTAGCCATCGACCGTC	LOC_Os01g39630
Os.35175.1.S1_at--289--583	1	Chr01:22680506..22680530 (25 bp)	GACCGTCATGTCTAAACTGTGCAGC	LOC_Os01g39630
Os.35175.1.S1_at--754--733	1	Chr01:22680488..22680512 (25 bp)	GTGCAGCATTCTCTGATCTTTCTAA	LOC_Os01g39630
Os.35175.1.S1_at--950--705	1	Chr01:22680436..22680460 (25 bp)	GTAACGCTGTCTTATTTGCTTCTGC	LOC_Os01g39630
Os.35175.1.S1_at--1007--1071	1	Chr01:22680421..22680445 (25 bp)	TTGCTTCTGCCGGTAGCTAATTGTA	LOC_Os01g39630
Os.35175.1.S1_at--726--473	1	Chr01:22680339..22680363 (25 bp)	GCTAACAAGTACTCTACAGGCCTGT	LOC_Os01g39630

Target Sequence

TAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTG
ACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCC
CCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCG
AGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGC
ATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCTTCTGCCGGTAGCTAA
TTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTTGATCCAAACATGTAACAGCTAACAAGTACTCTACA
GGCCTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis