Browse Element(s) Details


Os.35257.1.S1_at

Description gb:AK068296.1
DB_XREF= gi:32978314
TID=Os.35257.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hexose carrier protein HEX6 (OJ1606_D04.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149H14, full insert sequence.
FL= gb:AK068296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0396011/11Hexose carrier protein HEX6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03930OsAffx.22504.1.S1_at11/117+1645313..1647256Protein kinase domain containing protein, expressed
LOC_Os07g03940OsAffx.19542.3.S1_x_at6/117+1656345..1660567retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03950OsAffx.5197.1.S1_at11/117+1664392..1666302lectin receptor kinase 7, putative
LOC_Os07g03960Os.35257.1.S1_at11/117+1667610..1669621Hexose carrier protein HEX6, putative, expressed
LOC_Os07g03970OsAffx.10273.1.S1_at11/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03970Os.45971.1.S1_x_at2/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03980OsAffx.19018.1.S1_x_at4/117+1677411..1677914hypothetical protein
LOC_Os07g03980Os.38899.1.S1_x_at1/117+1677411..1677914hypothetical protein
LOC_Os07g03990OsAffx.28254.1.S1_at11/117+1681486..1684908Leucine Rich Repeat family protein, expressed
LOC_Os07g04000OsAffx.28255.1.S1_at11/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04000Os.45971.1.S1_x_at1/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35257.1.S1_at--405--6451Chr07:1669417..1669441 (25 bp)
GATAAGCTCTGAACAGTTAACCGTG
LOC_Os07g03960
Os.35257.1.S1_at--610--3851Chr07:1669425..1669449 (25 bp)
CTGAACAGTTAACCGTGCAGATCAC
LOC_Os07g03960
Os.35257.1.S1_at--189--6771Chr07:1669432..1669456 (25 bp)
GTTAACCGTGCAGATCACTGACTGA
LOC_Os07g03960
Os.35257.1.S1_at--1014--2611Chr07:1669435..1669459 (25 bp)
AACCGTGCAGATCACTGACTGACTA
LOC_Os07g03960
Os.35257.1.S1_at--63--5733Chr07:1669471..1669495 (25 bp)
GACTGATCCGGCCACGGTTGTTTCA
LOC_Os07g03960
Os.35257.1.S1_at--789--9273Chr07:1669477..1669501 (25 bp)
TCCGGCCACGGTTGTTTCAGAACAG
LOC_Os07g03960
Os.35257.1.S1_at--256--4391Chr07:1669481..1669505 (25 bp)
GCCACGGTTGTTTCAGAACAGAACT
LOC_Os07g03960
Os.35257.1.S1_at--910--5491Chr07:1669496..1669520 (25 bp)
GAACAGAACTGGCTATATCCAACAA
LOC_Os07g03960
Os.35257.1.S1_at--923--2451Chr07:1669516..1669540 (25 bp)
AACAACATGTGAAGACTAGCTAGCA
LOC_Os07g03960
Os.35257.1.S1_at--111--5711Chr07:1669529..1669553 (25 bp)
GACTAGCTAGCAGCACATTTTTTAG
LOC_Os07g03960
Os.35257.1.S1_at--415--10011Chr07:1669532..1669556 (25 bp)
TAGCTAGCAGCACATTTTTTAGCTG
LOC_Os07g03960
Target Sequence 
GATAAGCTCTGAACAGTTAACCGTGCAGATCACTGACTGACTATCTGATTGTCTGACTGATCCGGCCACGGTTGTTTCAG
AACAGAACTGGCTATATCCAACAACATGTGAAGACTAGCTAGCAGCACATTTTTTAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis