Browse Element(s) Details


Os.35288.1.S1_at

Description gb:AK068190.1
DB_XREF= gi:32978208
TID=Os.35288.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134O04, full insert sequence.
FL= gb:AK068190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3034011/11protein tyrosine phosphatase, putative, expressed
LOC_Os01g057801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30310Os.45976.1.S1_x_at2/118+18526936..18527873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30320NANA8+18528360..18529601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30330NANA8+18532717..18537091transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30340Os.35288.1.S1_at11/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340OsAffx.23126.1.S1_at3/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340OsAffx.22776.2.S1_at2/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340Os.38043.1.S1_x_at1/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340Os.532.1.S1_s_at1/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30350NANA8+18547307..18548754hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_x_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_x_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30370OsAffx.17239.1.S1_at11/118+18551523..18553336hypothetical protein
LOC_Os08g30370Os.52363.1.S1_x_at6/118+18551523..18553336hypothetical protein
LOC_Os08g30380OsAffx.29433.1.S1_at11/118+18560460..18561182hypothetical protein
LOC_Os08g30390NANA8+18562307..18562808NA
LOC_Os08g30400NANA8+18565111..18569450Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35288.1.S1_at--348--10111Chr08:18544581..18544605 (25 bp)
TATGGCTTAGGTTGGCTCTAGTCGT
LOC_Os08g30340
Os.35288.1.S1_at--577--7911Chr08:18544590..18544614 (25 bp)
GGTTGGCTCTAGTCGTAAACAAATC
LOC_Os08g30340
Os.35288.1.S1_at--555--4932Chr08:18544625..18544649 (25 bp)
GCATAAACTTCAGCGAATTCTCTTA
LOC_Os08g30340
Os.35288.1.S1_at--533--3111Chr08:18544652..18544676 (25 bp)
AATATGCTGCTGTTACTTCCATACT
LOC_Os08g30340
Os.35288.1.S1_at--268--3631Chr08:18544667..18544691 (25 bp)
CTTCCATACTAATTACTTTGCAGGT
LOC_Os08g30340
Os.35288.1.S1_at--621--4311Chr08:18544711..18544735 (25 bp)
CCTTCCTGTTGGTACGGTTAGTGAG
LOC_Os08g30340
Os.35288.1.S1_at--497--6891Chr08:18544948..18545340 (25 bp)
GTATGCCCCAGTATATCCACGCTTG
LOC_Os08g30340
Os.35288.1.S1_at--628--4351Chr08:18545324..18545347 (24 bp)
CCAGTATATCCACGCTTGTTTCGCT
LOC_Os08g30340
Os.35288.1.S1_at--377--6531Chr08:18545559..18545583 (25 bp)
GATTTGCTAATGGTGTGTCCTACCA
LOC_Os08g30340
Os.35288.1.S1_at--147--7471Chr08:18545571..18545595 (25 bp)
GTGTGTCCTACCAAAGATCGGCTTT
LOC_Os08g30340
Os.35288.1.S1_at--764--6391Chr08:18545586..18545610 (25 bp)
GATCGGCTTTTCCTTCTGTAAATAA
LOC_Os08g30340
Target Sequence 
TATGGCTTAGGTTGGCTCTAGTCGTAAACAAATCATAATATGTAGCATAAACTTCAGCGAATTCTCTTAAAAATATGCTG
CTGTTACTTCCATACTAATTACTTTGCAGGTACAGCACCTTCATAGTATGCCTTCCTGTTGGTACGGTTAGTGAGGTTGG
CCTAATCTACATTGTTCTTCCTTTCATGAAGGCATCTGGGAAATACTGCCTTAGGATGCCCAACAAATGGAATTTCTCCT
TCAACTACTTCTATGCCTCTATCTTTTTCATGGTTTTGTATGCCCCAGTATATCCACGCTTGTTTCGCTACTTGATCGCC
CAGCGGAAGAAGGCCTTGGCAAAAGCAAAAACCACATAACTATACTCAAGAGCTATCTACTCTGATTTCTGCTCGCGGCT
ACAGCTCAGGTTGCTACCGTTTCTTGAGCAAATAAGTAAAAGTGTATTAGAATGGAAATGCCGAAATACAGACTATCTTT
TCCCTTGGTAAATAAAAATGTACACGAGTACCATTTTCATGATTTGCTAATGGTGTGTCCTACCAAAGATCGGCTTTTCC
TTCTGTAAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis