Browse Element(s) Details


Os.35374.1.S1_x_at

Description gb:AK067783.1
DB_XREF= gi:32977801
TID=Os.35374.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119L12, full insert sequence.
FL= gb:AK067783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2712010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27090OsAffx.21755.1.S1_x_at1/117+15703068..15703964hypothetical protein
LOC_Os07g27100OsAffx.22351.1.S1_at11/117+15711361..15711660hypothetical protein
LOC_Os07g27110Os.37197.1.S1_at11/117+15716642..15721424RNA recognition motif family protein, expressed
LOC_Os07g27120Os.8069.1.S1_at11/117+15724593..15728423expressed protein
LOC_Os07g27120Os.35374.1.S1_x_at10/117+15724593..15728423expressed protein
LOC_Os07g27130Os.45967.1.A1_at1/117+15728576..15729518hypothetical protein
LOC_Os07g27140Os.46440.1.A1_s_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.1.S1_a_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.3.S1_at10/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.36388.1.S1_at1/117+15731085..15743951AT hook motif family protein
LOC_Os07g27150Os.16878.1.S1_at11/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27150OsAffx.8670.1.S1_at4/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35374.1.S1_x_at--100--1111Chr07:15726460..15726484 (25 bp)
AGTGGTGATGTTGCAGAACGCGTAC
LOC_Os07g27120
Os.35374.1.S1_x_at--1108--1831Chr07:15726528..15726552 (25 bp)
ACGCATGCTGTATGTTCCTCGACGA
LOC_Os07g27120
Os.35374.1.S1_x_at--13--6931Chr07:15726537..15726561 (25 bp)
GTATGTTCCTCGACGAGCTCAGCAC
LOC_Os07g27120
Os.35374.1.S1_x_at--331--3151Chr07:15726642..15726666 (25 bp)
AATTCAAAGATAGTTTCTTGCACCT
LOC_Os07g27120
Os.35374.1.S1_x_at--596--10631Chr07:15726668..15726692 (25 bp)
TTCGATGCTTCATATCTGGAGATTT
LOC_Os07g27120
Os.35374.1.S1_x_at--861--9831Chr07:15726710..15726734 (25 bp)
TACAACGACCTATCTCTGATTTTGG
LOC_Os07g27120
Os.35374.1.S1_x_at--990--7831Chr07:15726889..15726913 (25 bp)
GGTAAATGATCCCTCTGTGTAATAG
LOC_Os07g27120
Os.35374.1.S1_x_at--694--10571Chr07:15726929..15726953 (25 bp)
TTCTAGGGTGAACTAAACCATCCAA
LOC_Os07g27120
Os.35374.1.S1_x_at--1035--2631Chr07:15726944..15726968 (25 bp)
AACCATCCAAACAAGCAAGTGCAAT
LOC_Os07g27120
Os.35374.1.S1_x_at--508--7071Chr07:15726986..15727010 (25 bp)
GTAATTGACTGCAACATCTATCACC
LOC_Os07g27120
Os.35374.1.S1_x_at--502--1271NONE
AGATCTTAGGCTTTTTTGCCACTCG
NONE
Target Sequence 
AGTGGTGATGTTGCAGAACGCGTACAACATGNTCCACAGCGACATGGTGGCGGCCGTGCGTATNGCGCACGCATGCTGTA
TGTTCCTCGACGAGCTCAGCACCACATACCTCTTTCCTGCCCACCACAACGTCAACGTGAGCACANTCAGATCTCCCAAC
TTTATAAAAGAAATTGCATCTTAATTCAAAGATAGTTTCTTGCACCTNTTCGATGCTTCATATCTGGAGATTTGGGTAGC
GGAAATTGNNTACAACGACCTATCTCTGATTTTGGAGTCGATACTAAATAATCAAGAGAATGGGCNTGTTTTGTTTTNTT
TTTTTTTNCTAGAGTGGGATATGGAAACACCTAGCCCNCCGTNTAAGATGAGATGTTGTCTAGGATAATAGTTGTAATTG
GTAGATGGGATATTGCANGGCTANGAGAGGGTAAATGATCCCTCTGTGTAATAGGGGAGGGGAGTTTATTTCTAGGGTGA
ACTAAACCATCCAAACAAGCAAGTGCAATTNTGAACAGAAAGTAAGGTAATTGACTGCAACATCTATCACCNAATAGATG
GTGAAATGAAGATCTTAGGCTTTTTTGCCACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35374.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis