Browse Element(s) Details


Os.35603.1.S1_at

Description gb:AK066678.1
DB_XREF= gi:32976696
TID=Os.35603.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0018C10.29 (P0018C10.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070A21, full insert sequence.
FL= gb:AK058783.1 gb:AK066678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6580011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65770Os.55523.1.S1_at11/111+38518670..38519374expressed protein
LOC_Os01g65780Os.5334.2.S1_a_at11/111+38523871..38529461secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os01g65790Os.32182.1.S1_at8/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65790OsAffx.1382.1.S1_x_at3/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65800Os.35603.1.S1_at11/111+38539707..38543983expressed protein
LOC_Os01g65810OsAffx.11747.2.A1_at11/111+38545985..38547304hypothetical protein
LOC_Os01g65820OsAffx.23929.1.S1_at11/111+38547994..38548583hypothetical protein
LOC_Os01g65830Os.9534.1.S1_at11/111+38551270..38552844Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g65840Os.34903.1.S1_at11/111+38553274..38555289pentatricopeptide, putative, expressed
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein
LOC_Os01g65860Os.29810.1.S1_at11/111+38565328..38567154ANTH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35603.1.S1_at--132--5231Chr01:38541620..38541644 (25 bp)
GAATTTCCTACAGCTGAGGCCAAAG
LOC_Os01g65800
Os.35603.1.S1_at--1053--5871Chr01:38541543..38541567 (25 bp)
GAGCGTTCCTGCAACTATCTTGAAT
LOC_Os01g65800
Os.35603.1.S1_at--1158--7551Chr01:38541505..38541529 (25 bp)
GGGCCTTCAGAAGTGATGCTCATAT
LOC_Os01g65800
Os.35603.1.S1_at--774--6091Chr01:38541471..38541495 (25 bp)
GAGTCATCCTTCAACCATACTTGAT
LOC_Os01g65800
Os.35603.1.S1_at--1155--10771Chr01:38541451..38541475 (25 bp)
TTGATTGCAGTCATTGGTGCCTTCC
LOC_Os01g65800
Os.35603.1.S1_at--285--10671Chr01:38541430..38541454 (25 bp)
TTCCTGGAGTCCCAGATGCTTGGAA
LOC_Os01g65800
Os.35603.1.S1_at--44--8971Chr01:38541405..38541429 (25 bp)
TGAACTAGTAATTTCCCACCTTTTG
LOC_Os01g65800
Os.35603.1.S1_at--221--9491Chr01:38539914..38539938 (25 bp)
TCTGCTTCGTCTGCTATCAAGTAGC
LOC_Os01g65800
Os.35603.1.S1_at--108--10372Chr03:12686127..12686617 (25 bp)
TTTTTCTTAGACAGCACTACAGCAG
NONE
Os.35603.1.S1_at--1061--4991Chr01:38539852..38539876 (25 bp)
GCATGTCTTCATCTTGGTTTTTCCT
LOC_Os01g65800
Os.35603.1.S1_at--47--5491Chr01:38539753..38539777 (25 bp)
GAACATCACAATCGGCAACCTGTAT
LOC_Os01g65800
Target Sequence 
GAATTTCCTACAGCTGAGGCCAAAGGAGATGACAGAAGTGAATTTGGAGATATACTCGCTGGGGTTGTGGTGAACATGAG
CGTTCCTGCAACTATCTTGAATGTGACTTTGATGGGGGCCTTCAGAAGTGATGCTCATATCGGTATATGGAGTCATCCTT
CAACCATACTTGATTGCAGTCATTGGTGCCTTCCTGGAGTCCCAGATGCTTGGAATGAACTAGTAATTTCCCACCTTTTG
ACAAATGGTNNGNNNNNTTNNNNTNNCNNNCTNNNNNCNNANNNTNTANNNTNNTTTTCTTTTTCTTTTTCTTTTTTGTT
TTTCTGCTGCTTCTGCTTCGTCTGCTATCAAGTAGCGGACCATGATTTTTTTTTCTTAGACAGCACTACAGCAGCATGTC
TTCATCTTGGTTTTTCCTTTTCCTCAAGTGCTCCTTATACACGCCTCCGGGGTTACAGATTTTGTATCATTGTCTATTTT
GCGTTTTAGACAGAACATCACAATCGGCAACCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis