Browse Element(s) Details


Os.36050.1.S1_at

Description gb:AK064578.1
DB_XREF= gi:32974596
TID=Os.36050.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077M12.13 (OSJNBa0077M12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E10, full insert sequence.
FL= gb:AK064578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3262010/11BAH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32580Os.2741.4.S1_x_at8/118+20043808..20049748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32590Os.31488.1.S1_at11/118+20051949..20053335retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g32600Os.32734.1.S1_at11/118+20054145..20059544Protein kinase domain containing protein, expressed
LOC_Os08g32610OsAffx.29477.1.S1_x_at11/118+20062870..20064679U-box domain containing protein, expressed
LOC_Os08g32620Os.36050.1.S1_at10/118+20071789..20074935BAH domain containing protein, expressed
LOC_Os08g32630Os.38228.1.A1_x_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.17822.2.S1_s_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.1.A1_s_at10/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_x_at4/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_at2/118+20076018..20085987expressed protein
LOC_Os08g32630Os.35897.1.A1_at1/118+20076018..20085987expressed protein
LOC_Os08g32650Os.28454.1.S1_at10/118+20086397..20088991cation efflux family protein, expressed
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009791biological_processpost-embryonic development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0042156molecular_functionzinc-mediated transcriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36050.1.S1_at--715--6411Chr08:20072627..20072651 (25 bp)
GATCTCATGGTGCAGTGCGATGACT
LOC_Os08g32620
Os.36050.1.S1_at--281--4631Chr08:20072643..20072663 (21 bp)
GCGATGACTGCAAGGACTGGTTTCA
LOC_Os08g32620
Os.36050.1.S1_at--278--8951NONE
TGACTGCAAGGACTGGTTTCATCCT
NONE
Os.36050.1.S1_at--601--7871Chr08:20073739..20073763 (25 bp)
GGTTTCATCCTTCATGCATGAGCAT
LOC_Os08g32620
Os.36050.1.S1_at--14--5011Chr08:20073773..20073797 (25 bp)
GCAGGCCAAAAAACTAGATCACTTT
LOC_Os08g32620
Os.36050.1.S1_at--683--2531Chr08:20073784..20073808 (25 bp)
AACTAGATCACTTTGTGTGCTCAGA
LOC_Os08g32620
Os.36050.1.S1_at--1049--2031Chr08:20073793..20073817 (25 bp)
ACTTTGTGTGCTCAGATTGTGTCAA
LOC_Os08g32620
Os.36050.1.S1_at--1016--31Chr08:20073808..20073832 (25 bp)
ATTGTGTCAAGGAAAACGGTGCAAA
LOC_Os08g32620
Os.36050.1.S1_at--275--2571Chr08:20073822..20073846 (25 bp)
AACGGTGCAAAGAGACCTTCACATG
LOC_Os08g32620
Os.36050.1.S1_at--246--7351Chr08:20073826..20073850 (25 bp)
GTGCAAAGAGACCTTCACATGCATA
LOC_Os08g32620
Os.36050.1.S1_at--562--5011Chr08:20073852..20073876 (25 bp)
GCAGGTTCAACAAAGTATGAGCCTA
LOC_Os08g32620
Target Sequence 
GATCTCATGGTGCAGTGCGATGACTGCAAGGACTGGTTTCATCCTTCATGCATGAGCATGACGNTTGAGCAGGCCAAAAA
ACTAGATCACTTTGTGTGCTCAGATTGTGTCAAGGAAAACGGTGCAAAGAGACCTTCACATGCATATGCAGGTTCAACAA
AGTATGAGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis