Browse Element(s) Details


Os.36283.1.S1_at

Description gb:AK063833.1
DB_XREF= gi:32973851
TID=Os.36283.1
CNT=127
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.36283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B05, full insert sequence.
FL= gb:AK063833.1 gb:AK121693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2509011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25070NANA12+14398588..14400870retrotransposon protein, putative, unclassified
LOC_Os12g25080OsAffx.8880.1.S1_at1/1112+14403113..14406579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25090Os.36283.1.S1_at11/1112+14408622..14409361expressed protein
LOC_Os12g25100OsAffx.10633.1.S1_at7/1112+14412283..14415749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25110OsAffx.31871.1.S1_at11/1112+14417761..14418874hypothetical protein
LOC_Os12g25110Os.45412.1.S1_at1/1112+14417761..14418874hypothetical protein
LOC_Os12g25120Os.10168.1.S1_at11/1112+14421204..14422231Histone H2A, putative, expressed
LOC_Os12g25130Os.55445.1.S1_at11/1112+14430672..14431393expressed protein
LOC_Os12g25140OsAffx.19816.1.S1_at11/1112+14432825..14433163hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36283.1.S1_at--461--10571Chr12:14409303..14409327 (25 bp)
TTCTTTCATCACCAACTCGATCAGA
LOC_Os12g25090
Os.36283.1.S1_at--441--4051Chr12:14409084..14409310 (25 bp)
CGATCAGACCGCAGAGACGAGGGAA
LOC_Os12g25090
Os.36283.1.S1_at--956--2091Chr12:14408964..14408988 (25 bp)
ACATCGTCGTGCTGCCATTCGGCAC
LOC_Os12g25090
Os.36283.1.S1_at--1010--10371Chr12:14408924..14408948 (25 bp)
TTTTCGCTTCAACCGTGTCCGAATC
LOC_Os12g25090
Os.36283.1.S1_at--632--9711Chr12:14408916..14408940 (25 bp)
TCAACCGTGTCCGAATCTTCGTCGA
LOC_Os12g25090
Os.36283.1.S1_at--13--1391Chr12:14408880..14408904 (25 bp)
AGACGCCTCGTGTGGGCTAGCTAGC
LOC_Os12g25090
Os.36283.1.S1_at--118--7451Chr12:14408747..14408771 (25 bp)
GTGTAAATCATCAATCCTGGGATGA
LOC_Os12g25090
Os.36283.1.S1_at--272--5251Chr12:14408715..14408739 (25 bp)
GAATCAGCTGTCAGGACCACTGCAT
LOC_Os12g25090
Os.36283.1.S1_at--1027--7111Chr12:14408706..14408730 (25 bp)
GTCAGGACCACTGCATGGTCTTCTT
LOC_Os12g25090
Os.36283.1.S1_at--23--10551Chr12:14408686..14408710 (25 bp)
TTCTTGTACTCCTCTCAAACTTGTT
LOC_Os12g25090
Os.36283.1.S1_at--903--9691Chr12:14408672..14408696 (25 bp)
TCAAACTTGTTCTTGCAACCCGTCT
LOC_Os12g25090
Target Sequence 
TTCTTTCATCACCAACTCGATCAGACCGCAGAGACGAGGGAAGATGAGCTCGTCGGCGAAGACGTCGTGGCCGGAGGTGG
TTGGGCTGAGCATAGAGGAGGCCAAGAAGGTGATTCTCAAGGACAAGCCCGACGCCGACATCGTCGTGCTGCCATTCGGC
ACGGCGGTGCCAGAGGATTTTCGCTTCAACCGTGTCCGAATCTTCGTCGACACCGTCGCCGAGACGCCTCGTGTGGGCTA
GCTAGCAGAATATATATAGCTTTAAATTAAAATTAATAATGGTTAGTAGCGATGCTGCTGTGCCCCGACCGTATCCTTTC
TCTAAAATTGATATCATATATATGTATTATATGTGTGTAAATCATCAATCCTGGGATGAAAAAGATGAATCAGCTGTCAG
GACCACTGCATGGTCTTCTTGTACTCCTCTCAAACTTGTTCTTGCAACCCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis