Browse Element(s) Details


Os.10168.1.S1_at

Description gb:AK071511.1
DB_XREF= gi:32981534
TID=Os.10168.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023096P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096P04, full insert sequence.
FL= gb:AK058913.1 gb:AK071511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2512011/11Histone H2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25070NANA12+14398588..14400870retrotransposon protein, putative, unclassified
LOC_Os12g25080OsAffx.8880.1.S1_at1/1112+14403113..14406579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25090Os.36283.1.S1_at11/1112+14408622..14409361expressed protein
LOC_Os12g25100OsAffx.10633.1.S1_at7/1112+14412283..14415749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25110OsAffx.31871.1.S1_at11/1112+14417761..14418874hypothetical protein
LOC_Os12g25110Os.45412.1.S1_at1/1112+14417761..14418874hypothetical protein
LOC_Os12g25120Os.10168.1.S1_at11/1112+14421204..14422231Histone H2A, putative, expressed
LOC_Os12g25130Os.55445.1.S1_at11/1112+14430672..14431393expressed protein
LOC_Os12g25140OsAffx.19816.1.S1_at11/1112+14432825..14433163hypothetical protein
LOC_Os12g25150NANA12+14435735..14437452retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25160OsAffx.19817.3.S1_at11/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25160OsAffx.19817.1.S1_x_at1/1112+14445153..14445686MATE efflux family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10168.1.S1_at--583--4471Chr12:14421451..14421475 (25 bp)
GCCTGCATTCGTCATCTTGTCTTAT
LOC_Os12g25120
Os.10168.1.S1_at--233--10631Chr12:14421444..14421468 (25 bp)
TTCGTCATCTTGTCTTATGCACTAG
LOC_Os12g25120
Os.10168.1.S1_at--553--9571Chr12:14421437..14421461 (25 bp)
TCTTGTCTTATGCACTAGTAGGATA
LOC_Os12g25120
Os.10168.1.S1_at--953--5091Chr12:14421426..14421450 (25 bp)
GCACTAGTAGGATATTTAGCTGTTT
LOC_Os12g25120
Os.10168.1.S1_at--274--4371Chr12:14421393..14421417 (25 bp)
CCAAGGTGTGTTGTTGCGTTAAGCA
LOC_Os12g25120
Os.10168.1.S1_at--183--8592Chr12:14421334..14421358 (25 bp)
TGGTTTGTTTTGGTGGCCTGATTGA
LOC_Os12g25120
Os.10168.1.S1_at--565--10411Chr12:14421327..14421351 (25 bp)
TTTTGGTGGCCTGATTGATGGCTGT
LOC_Os12g25120
Os.10168.1.S1_at--299--8951Chr12:14421294..14421318 (25 bp)
TGAAATTTTTGGCTATTTATCTCAG
LOC_Os12g25120
Os.10168.1.S1_at--191--10351Chr12:14421279..14421303 (25 bp)
TTTATCTCAGATGTAATCCCGGCGA
LOC_Os12g25120
Os.10168.1.S1_at--134--9771Chr12:14421266..14421290 (25 bp)
TAATCCCGGCGATGATCTTGCTGTG
LOC_Os12g25120
Os.10168.1.S1_at--427--6431Chr12:14421253..14421277 (25 bp)
GATCTTGCTGTGTTTGGCACTTGAG
LOC_Os12g25120
Target Sequence 
GCCTGCATTCGTCATCTTGTCTTATGCACTAGTAGGATATTTAGCTGTTTATTTTGGANNNNCCAAGGTGTGTTGTTGCG
TTAAGCAGTAGGAAGAAACAAGAAAAAAATTGCTTAGTTCTTGGTTTGTTTTGGTGGCCTGATTGATGGCTGTGAATATG
GTGAAATTTTTGGCTATTTATCTCAGATGTAATCCCGGCGATGATCTTGCTGTGTTTGGCACTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis