Browse Element(s) Details


OsAffx.19817.3.S1_at

Description tigr:9640.m02401
TID=OsAffx.19817.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2516011/11MATE efflux family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25120Os.10168.1.S1_at11/1112+14421204..14422231Histone H2A, putative, expressed
LOC_Os12g25130Os.55445.1.S1_at11/1112+14430672..14431393expressed protein
LOC_Os12g25140OsAffx.19816.1.S1_at11/1112+14432825..14433163hypothetical protein
LOC_Os12g25150NANA12+14435735..14437452retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25160OsAffx.19817.3.S1_at11/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25160OsAffx.19817.1.S1_x_at1/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25170Os.22842.1.S1_at11/1112+14447241..14448994NB-ARC domain containing protein, expressed
LOC_Os12g25180Os.8468.1.S1_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.8468.1.S1_s_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.35224.1.A1_x_at10/1112+14450578..14454081expressed protein
LOC_Os12g25180OsAffx.19818.1.S1_at1/1112+14450578..14454081expressed protein
LOC_Os12g25190Os.27639.1.S1_x_at5/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190OsAffx.8980.1.S1_at3/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190Os.53731.1.S1_at1/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006879biological_processiron ion homeostasis
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19817.3.S1_at--839--4651Chr12:14445440..14445464 (25 bp)
GCGTGCTGCAACTTGCCATCGTCCT
LOC_Os12g25160
OsAffx.19817.3.S1_at--1101--9011Chr12:14445434..14445458 (25 bp)
TGCAACTTGCCATCGTCCTCGGCGT
LOC_Os12g25160
OsAffx.19817.3.S1_at--583--10611Chr12:14445215..14445239 (25 bp)
TTCGTCGTTGGCTCGCAGACGATAA
LOC_Os12g25160
OsAffx.19817.3.S1_at--939--7191Chr12:14445212..14445236 (25 bp)
GTCGTTGGCTCGCAGACGATAAGCA
LOC_Os12g25160
OsAffx.19817.3.S1_at--354--9391Chr12:14445211..14445235 (25 bp)
TCGTTGGCTCGCAGACGATAAGCAC
LOC_Os12g25160
OsAffx.19817.3.S1_at--780--6611Chr12:14445209..14445233 (25 bp)
GTTGGCTCGCAGACGATAAGCACGC
LOC_Os12g25160
OsAffx.19817.3.S1_at--716--10871Chr12:14445208..14445232 (25 bp)
TTGGCTCGCAGACGATAAGCACGCT
LOC_Os12g25160
OsAffx.19817.3.S1_at--566--8491Chr12:14445207..14445231 (25 bp)
TGGCTCGCAGACGATAAGCACGCTG
LOC_Os12g25160
OsAffx.19817.3.S1_at--314--8331Chr12:14445206..14445230 (25 bp)
GGCTCGCAGACGATAAGCACGCTGG
LOC_Os12g25160
OsAffx.19817.3.S1_at--1148--4791Chr12:14445205..14445229 (25 bp)
GCTCGCAGACGATAAGCACGCTGGC
LOC_Os12g25160
OsAffx.19817.3.S1_at--541--9351Chr12:14445203..14445227 (25 bp)
TCGCAGACGATAAGCACGCTGGCCT
LOC_Os12g25160
Target Sequence 
GCGTGCTGCAACTTGCCATCGTCCTCGGCGTCGGGCTGACGGCCTTCCTCGCCACCGGCATGTGGTTCGGCGCCGGCGTT
TTCACCAGCGATGCCGCCGTCATCAGCACCATCCACAAAGGCGTTCCGTTCGTCGTTGGCTCGCAGACGATAAGCACGCT
GGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19817.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis