Browse Element(s) Details


OsAffx.19818.1.S1_at

Description tigr:9640.m02403
TID=OsAffx.19818.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g251801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25130Os.55445.1.S1_at11/1112+14430672..14431393expressed protein
LOC_Os12g25140OsAffx.19816.1.S1_at11/1112+14432825..14433163hypothetical protein
LOC_Os12g25150NANA12+14435735..14437452retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25160OsAffx.19817.3.S1_at11/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25160OsAffx.19817.1.S1_x_at1/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25170Os.22842.1.S1_at11/1112+14447241..14448994NB-ARC domain containing protein, expressed
LOC_Os12g25180Os.8468.1.S1_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.8468.1.S1_s_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.35224.1.A1_x_at10/1112+14450578..14454081expressed protein
LOC_Os12g25180OsAffx.19818.1.S1_at1/1112+14450578..14454081expressed protein
LOC_Os12g25190Os.27639.1.S1_x_at5/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190OsAffx.8980.1.S1_at3/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190Os.53731.1.S1_at1/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19818.1.S1_at--2--8271Chr12:14453881..14454016 (25 bp)
GGCATGGACAGGGAAGTTACCGAAA
LOC_Os12g25180
OsAffx.19818.1.S1_at--946--8031Chr12:14454073..14454095 (23 bp)
GGAGTTGCCAAACCAACAAGTGTTT
NONE
OsAffx.19818.1.S1_at--541--10371Chr12:14454172..14454196 (25 bp)
TTTTCTTTATAACATGGGTGGTGGC
NONE
OsAffx.19818.1.S1_at--262--3511Chr12:14454206..14454230 (25 bp)
CATGGTAGTGACAATGCAGCATTTT
NONE
OsAffx.19818.1.S1_at--694--5031Chr12:14454221..14454245 (25 bp)
GCAGCATTTTACATGGGAATAGGAA
NONE
OsAffx.19818.1.S1_at--455--8191Chr12:14454236..14454327 (25 bp)
GGAATAGGGTATTCAACCCCTCTCA
NONE
OsAffx.19818.1.S1_at--260--9711Chr12:14454315..14454339 (25 bp)
TCAACCCCTCTCAACGAAGAAACAG
NONE
OsAffx.19818.1.S1_at--619--2491Chr12:14454335..14454359 (25 bp)
AACAGGTGGTTTTCACAGTATCGAA
NONE
OsAffx.19818.1.S1_at--974--2851Chr12:14454358..14454382 (25 bp)
AAGTGGTTTCGTTTGTGCGGCAGTC
NONE
OsAffx.19818.1.S1_at--434--8691Chr12:14454371..14454395 (25 bp)
TGTGCGGCAGTCAATGCCACTTCTT
NONE
OsAffx.19818.1.S1_at--319--9491Chr12:14454401..14454425 (25 bp)
TCTCCTCTCTGTTTCATCGAAATGG
NONE
Target Sequence 
GGCATGGACAGGGAAGTTACCGAAATTCACTTTGGAAATTTCGGTACCTCTTGGTACCTCATGAAATTCCCTCTGAGATG
TGGAGTTGCCAAACCAACAAGTGTTTTTCTTTATAACATGGGTGGTGGCATGAGGAGGCATGGTAGTGACAATGCAGCAT
TTTACATGGGAATAGGAATAGGGTATTCAACCCCTCTCAACGAAGAAACAGGTGGTTTTCACAGTATCGAAGTGGTTTCG
TTTGTGCGGCAGTCAATGCCACTTCTTCCTCCTCTCCTCTCTGTTTCATCGAAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis