Browse Element(s) Details


Os.22842.1.S1_at

Description gb:AK067669.1
DB_XREF= gi:32977687
TID=Os.22842.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118K05, full insert sequence.
FL= gb:AK067669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2517011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25130Os.55445.1.S1_at11/1112+14430672..14431393expressed protein
LOC_Os12g25140OsAffx.19816.1.S1_at11/1112+14432825..14433163hypothetical protein
LOC_Os12g25150NANA12+14435735..14437452retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25160OsAffx.19817.3.S1_at11/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25160OsAffx.19817.1.S1_x_at1/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25170Os.22842.1.S1_at11/1112+14447241..14448994NB-ARC domain containing protein, expressed
LOC_Os12g25180Os.8468.1.S1_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.8468.1.S1_s_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.35224.1.A1_x_at10/1112+14450578..14454081expressed protein
LOC_Os12g25180OsAffx.19818.1.S1_at1/1112+14450578..14454081expressed protein
LOC_Os12g25190Os.27639.1.S1_x_at5/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190OsAffx.8980.1.S1_at3/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190Os.53731.1.S1_at1/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22842.1.S1_at--935--1231Chr12:14448404..14448428 (25 bp)
AGATGTCCAGGAGAACCCTAGGCTG
LOC_Os12g25170
Os.22842.1.S1_at--1088--531Chr12:14448447..14448471 (25 bp)
ATCGCCGCGAAGCTGAACGGATCAT
LOC_Os12g25170
Os.22842.1.S1_at--107--6251Chr12:14448576..14448600 (25 bp)
GATGGACTTGGCTACATTGCTGATT
LOC_Os12g25170
Os.22842.1.S1_at--300--8151Chr12:14448605..14448629 (25 bp)
GGAAATTTTGCTGCCAAGTCGCCTA
LOC_Os12g25170
Os.22842.1.S1_at--1015--3211Chr12:14448619..14448643 (25 bp)
CAAGTCGCCTATCCGTGAAGGAGGT
LOC_Os12g25170
Os.22842.1.S1_at--1000--10091Chr12:14448686..14448710 (25 bp)
TAGGCTGCAGGGTCTGTGCTTGCCA
LOC_Os12g25170
Os.22842.1.S1_at--394--931Chr12:14448796..14448820 (25 bp)
AGGCAGTGTTGCCATTCTACTCCTT
LOC_Os12g25170
Os.22842.1.S1_at--784--9531Chr12:14448811..14448835 (25 bp)
TCTACTCCTTGTACTACACTGCTAA
LOC_Os12g25170
Os.22842.1.S1_at--81--1991Chr12:14448828..14448852 (25 bp)
ACTGCTAAGTGTGCTGTGGACTCTG
LOC_Os12g25170
Os.22842.1.S1_at--990--7671Chr12:14448895..14448919 (25 bp)
GGGTTGCATCTTATTGCCTAATTCA
LOC_Os12g25170
Os.22842.1.S1_at--821--8771Chr12:14448940..14448964 (25 bp)
TGTTTGATGTAACCAGTGCTCTTCT
LOC_Os12g25170
Target Sequence 
AGATGTCCAGGAGAACCCTAGGCTGGTGGCAGCAGGAAAATCGATCGCCGCGAAGCTGAACGGATCATTNTTNGGCGCAA
AGATNATCGGGGCGATTCTGAAAGAAAATCCANATCCTAAATTNTGGTGTACGGTTCTTNAGAGAGATATTGGGGGGCTG
TCATTGTTGGGTGATGGACTTGGCTACATTGCTGATTTAGTGGAAATTTTGCTGCCAAGTCGCCTATCCGTGAAGGAGGT
NTTNGTCTCCAAGAACNCATTGTCCTNTGAGACAGAGTTGGCTAGGCTGCAGGGTCTGTGCTTGCCATGTCCTAGCTCTG
CCCCTCTNGCCACTNATAGCAGTGAGCTCAGCTTAGCAAAAGCAACCAGCTATGNAAGNGTGTTGCTGTGCAAGGCAGTG
TTGCCATTCTACTCCTTGTACTACACTGCTAAGTGTGCTGTGGACTCTGAGAACTGTTACTCAAAGTTTAGTGTTGTTTA
GTTCATTTATAGGGTTGCATCTTATTGCCTAATTCAAAAATTTCTGTTTTGTTCCATGTTTGATGTAACCAGTGCTCTTC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis