Browse Element(s) Details


Os.55445.1.S1_at

Description gb:AK108104.1
DB_XREF= gi:32993313
TID=Os.55445.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B05, full insert sequence.
FL= gb:AK108104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2513011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25080OsAffx.8880.1.S1_at1/1112+14403113..14406579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25090Os.36283.1.S1_at11/1112+14408622..14409361expressed protein
LOC_Os12g25100OsAffx.10633.1.S1_at7/1112+14412283..14415749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25110OsAffx.31871.1.S1_at11/1112+14417761..14418874hypothetical protein
LOC_Os12g25110Os.45412.1.S1_at1/1112+14417761..14418874hypothetical protein
LOC_Os12g25120Os.10168.1.S1_at11/1112+14421204..14422231Histone H2A, putative, expressed
LOC_Os12g25130Os.55445.1.S1_at11/1112+14430672..14431393expressed protein
LOC_Os12g25140OsAffx.19816.1.S1_at11/1112+14432825..14433163hypothetical protein
LOC_Os12g25150NANA12+14435735..14437452retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25160OsAffx.19817.3.S1_at11/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25160OsAffx.19817.1.S1_x_at1/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25170Os.22842.1.S1_at11/1112+14447241..14448994NB-ARC domain containing protein, expressed
LOC_Os12g25180Os.8468.1.S1_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.8468.1.S1_s_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.35224.1.A1_x_at10/1112+14450578..14454081expressed protein
LOC_Os12g25180OsAffx.19818.1.S1_at1/1112+14450578..14454081expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55445.1.S1_at--255--6791Chr12:14431335..14431359 (25 bp)
GTTATCATTCAACAGCGTGGTATAT
LOC_Os12g25130
Os.55445.1.S1_at--568--7651Chr12:14431307..14431331 (25 bp)
GGGATCGACCGAAACAGCCATGGCG
LOC_Os12g25130
Os.55445.1.S1_at--190--1151Chr12:14431097..14431236 (25 bp)
AGTCCCGAGCATGGGCGTTGGATCA
LOC_Os12g25130
Os.55445.1.S1_at--772--4272Chr12:14434019..14434043 (25 bp)
CCTGCAGTGCCGGTGCTGCTCGAAG
NONE
Os.55445.1.S1_at--622--5291Chr12:14430949..14430973 (25 bp)
GAAGGCGAACCCGAGCAACTGCCAG
LOC_Os12g25130
Os.55445.1.S1_at--703--2551Chr12:14430933..14430957 (25 bp)
AACTGCCAGCTCACTAGCTGCAGCT
LOC_Os12g25130
Os.55445.1.S1_at--1055--1631Chr12:14430863..14430887 (25 bp)
AGCGCTGCGGCTGCTAGCTGCATTC
LOC_Os12g25130
Os.55445.1.S1_at--515--4591Chr12:14430847..14430871 (25 bp)
GCTGCATTCCTAGCTAGCCGGCGAG
LOC_Os12g25130
Os.55445.1.S1_at--512--4611Chr12:14430827..14430851 (25 bp)
GCGAGCCGAGCGTGAGCTAATGCAT
LOC_Os12g25130
Os.55445.1.S1_at--1079--751Chr12:14430745..14430769 (25 bp)
ATGTCATCAATAAATCTTGGCGTTA
LOC_Os12g25130
Os.55445.1.S1_at--141--3031Chr12:14430676..14430700 (25 bp)
AATGCGTACTGGTGGTTCTGTTCTG
LOC_Os12g25130
Target Sequence 
GTTATCATTCAACAGCGTGGTATATATAGGGATCGACCGAAACAGCCATGGCGAACTGCCGCAGGAGGATGACCTCCCCT
CTCTCGAGTTTGGTCGCCGTCCTCCTCATCGTCGTCGCCGTGCAGTCCCGAGCATGGGCGTTGGATCAGCTGGATGACAT
GGTGCCGATGAAGACGGCGAAGCCGGTGGTGGTGGCCATCGCCGGCGGCGGCGGCAGCGGCGTAGTAGGGACGTTGGCGG
CGCCGTTGTGCCTGCAGTGCCGGTGCTGCTCGAAGGCGAACCCGAGCAACTGCCAGCTCACTAGCTGCAGCTCCACCTTC
AACTGCGACCCTGCCGGCAAGTGCACCCTCGTCCAGCAGCGCTGCGGCTGCTAGCTGCATTCCTAGCTAGCCGGCGAGCC
GAGCGTGAGCTAATGCATTGGATGCCAAAGATAGTTCTTGCTGAAAGTATAAGCATGTATATAGAGATTTAATTTATGTC
ATCAATAAATCTTGGCGTTAAACAAAGACAAACTGATTAAAAAAATGTGGAACTTAATATAATAAATGCGTACTGGTGGT
TCTGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis