Browse Element(s) Details


OsAffx.31871.1.S1_at

Description tigr:9640.m02396
TID=OsAffx.31871.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2511011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25070NANA12+14398588..14400870retrotransposon protein, putative, unclassified
LOC_Os12g25080OsAffx.8880.1.S1_at1/1112+14403113..14406579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25090Os.36283.1.S1_at11/1112+14408622..14409361expressed protein
LOC_Os12g25100OsAffx.10633.1.S1_at7/1112+14412283..14415749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25110OsAffx.31871.1.S1_at11/1112+14417761..14418874hypothetical protein
LOC_Os12g25110Os.45412.1.S1_at1/1112+14417761..14418874hypothetical protein
LOC_Os12g25120Os.10168.1.S1_at11/1112+14421204..14422231Histone H2A, putative, expressed
LOC_Os12g25130Os.55445.1.S1_at11/1112+14430672..14431393expressed protein
LOC_Os12g25140OsAffx.19816.1.S1_at11/1112+14432825..14433163hypothetical protein
LOC_Os12g25150NANA12+14435735..14437452retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31871.1.S1_at--868--3911Chr12:14417847..14417871 (25 bp)
CTGGCCCAGCACGAAGGCGAACAAA
LOC_Os12g25110
OsAffx.31871.1.S1_at--589--2951Chr12:14417860..14417884 (25 bp)
AAGGCGAACAAACGCATTGTGCGCG
LOC_Os12g25110
OsAffx.31871.1.S1_at--168--51Chr12:14417875..14417899 (25 bp)
ATTGTGCGCGAAAGCCACAAGCAGA
LOC_Os12g25110
OsAffx.31871.1.S1_at--868--9291Chr12:14418041..14418065 (25 bp)
TCCGCACAACGGTCGATGGCAGTAG
LOC_Os12g25110
OsAffx.31871.1.S1_at--1087--9991Chr12:14418292..14418696 (25 bp)
TAGACAAAATCGTACTTGCCCTTCC
LOC_Os12g25110
OsAffx.31871.1.S1_at--32--9151Chr12:14418699..14418723 (25 bp)
TGCGTCGTGCCAGTGCTACACGGAG
LOC_Os12g25110
OsAffx.31871.1.S1_at--752--8011Chr12:14418720..14418744 (25 bp)
GGAGGCACACCACGAGCATGAGCTT
LOC_Os12g25110
OsAffx.31871.1.S1_at--295--8911Chr12:14418744..14418768 (25 bp)
TGAGCAAGCTGATCACCGGAGGCCA
LOC_Os12g25110
OsAffx.31871.1.S1_at--403--6211Chr12:14418762..14418786 (25 bp)
GAGGCCATAGGCTTTGCTACTACCA
LOC_Os12g25110
OsAffx.31871.1.S1_at--1064--10691Chr12:14418775..14418799 (25 bp)
TTGCTACTACCACCAATTAACCAAC
LOC_Os12g25110
OsAffx.31871.1.S1_at--1040--3231Chr12:14418800..14418824 (25 bp)
CAACCCTTTGGAGACCGTGGTGATG
LOC_Os12g25110
Target Sequence 
CTGGCCCAGCACGAAGGCGAACAAACGCATTGTGCGCGAAAGCCACAAGCAGAAGGCGAATAGAACACGATGCCGCGATT
GCCACCGCCCACGTCTTCTGATCTTCTCCTCACGGCGCCGAATTCGCGCGGCGCAACAGCGCAAGGCCACGCATCGGAGC
GCCGGCGGCCGGCTTCCCATTTTCCTTCCACTACTCCGCACAACGGTCGATGGCAGTAGGGCACGAGAAAATCACAAAAT
TATAGGTCGGTTAGACAAAATCGTACTTGCCCTTCCCCTGCGTCGTGCCAGTGCTACACGGAGGCACACCACGAGCATGA
GCTTGAGCAAGCTGATCACCGGAGGCCATAGGCTTTGCTACTACCACCAATTAACCAACCAACCCTTTGGAGACCGTGGT
GATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis