Browse Element(s) Details

Os.36672.1.S1_at

Description

gb:AK062921.1
DB_XREF= gi:32972939
TID=Os.36672.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana chromosome II BAC F11F19 genomic sequence, putative DNA-binding protein RAV2. (AC007017) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-H07, full insert sequence.
FL= gb:AK062921.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01860	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01800	OsAffx.15220.1.S1_s_at	11/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	Os.55780.1.S1_at	10/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	OsAffx.15220.2.S1_s_at	8/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	Os.48472.1.A1_at	7/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	OsAffx.14814.1.S1_at	1/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01810	NA	NA	6	+	465385..466183	hypothetical protein
LOC_Os06g01820	OsAffx.10379.1.A1_at	2/11	6	+	469319..470927	hypothetical protein
LOC_Os06g01820	Os.51646.1.S1_at	1/11	6	+	469319..470927	hypothetical protein
LOC_Os06g01830	OsAffx.15222.1.S1_at	9/11	6	+	472151..472577	hypothetical protein
LOC_Os06g01840	Os.12745.1.S1_at	11/11	6	+	476099..478173	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01850	Os.10696.1.S1_at	11/11	6	+	478199..480658	Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os06g01860	Os.36672.1.S1_at	11/11	6	+	483347..484309	expressed protein
LOC_Os06g01860	Os.36672.2.S1_x_at	11/11	6	+	483347..484309	expressed protein
LOC_Os06g01870	NA	NA	6	+	488917..489695	hypothetical protein
LOC_Os06g01879	NA	NA	6	+	497435..498193	hypothetical protein
LOC_Os06g01890	NA	NA	6	+	501599..503591	retrotransposon protein, putative, unclassified
LOC_Os06g01899	NA	NA	6	+	504442..505200	hypothetical protein
LOC_Os06g01910	OsAffx.22610.1.S1_at	11/11	6	+	509121..510150	agamous-like MADS box protein OPMADS1, putative, expressed
LOC_Os06g01910	Os.50533.1.S1_at	1/11	6	+	509121..510150	agamous-like MADS box protein OPMADS1, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.36672.1.S1_at--153--489	1	Chr06:483692..483716 (25 bp)	GCTTTGATCTAGCTGAGGCATCTCA	LOC_Os06g01860
Os.36672.1.S1_at--885--679	1	Chr06:483664..483688 (25 bp)	GTTTTGTACTAATTCTCCAACTGAT	LOC_Os06g01860
Os.36672.1.S1_at--392--655	1	Chr06:483642..483666 (25 bp)	GATTAGTATTCATTTTCCCTCAAAA	LOC_Os06g01860
Os.36672.1.S1_at--703--1053	1	Chr06:483605..483629 (25 bp)	TTCATACACGAACATGCATGCTGCT	LOC_Os06g01860
Os.36672.1.S1_at--106--63	1	Chr06:483588..483612 (25 bp)	ATGCTGCTCTCCTGTCGAATAAAAT	LOC_Os06g01860
Os.36672.1.S1_at--562--797	1	Chr06:483486..483510 (25 bp)	GGATCGATTGATATATATGCACTGA	LOC_Os06g01860
Os.36672.1.S1_at--1007--817	1	Chr06:483442..483466 (25 bp)	GGAAGCAAGCAACAACACAAGGCTA	LOC_Os06g01860
Os.36672.1.S1_at--912--831	1	Chr06:483422..483446 (25 bp)	GGCTAAGGTACCTAGCTAGCTTTGC	LOC_Os06g01860
Os.36672.1.S1_at--68--487	1	Chr06:483408..483432 (25 bp)	GCTAGCTTTGCTTTCATTTTTCCAA	LOC_Os06g01860
Os.36672.1.S1_at--831--351	1	Chr06:483374..483398 (25 bp)	CATGTTTCTTGTCAGATCGATGAAT	LOC_Os06g01860
Os.36672.1.S1_at--506--29	1	Chr06:483351..483375 (25 bp)	ATAGAATTTGTTTTTGCGGGTTGAT	LOC_Os06g01860

Target Sequence

GCTTTGATCTAGCTGAGGCATCTCATCAGTTTTGTACTAATTCTCCAACTGATTAGTATTCATTTTCCCTCAAAAAAATT
AGTATTATTCATACACGAACATGCATGCTGCTCTCCTGTCGAATAAAATGAGGTCGTCGAAGACGAAGTTGTACATTAGA
TTAGCACAAGATTAATTAGGAGGGGTGAATTTAATTAATTAGACATGGATCGATTGATATATATGCACTGAAGATGATTA
ATTGGACGATGGAAGCAAGCAACAACACAAGGCTAAGGTACCTAGCTAGCTTTGCTTTCATTTTTCCAAATTAAATTTCA
TGTTTCTTGTCAGATCGATGAATAGAATTTGTTTTTGCGGGTTGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis