Browse Element(s) Details


Os.36846.1.S1_at

Description gb:AK062527.1
DB_XREF= gi:32972545
TID=Os.36846.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D11, full insert sequence.
FL= gb:AK062527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2492011/11ubiquitin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24880OsAffx.25214.1.S1_at11/113+14153330..14155024pentatricopeptide, putative
LOC_Os03g24890Os.6246.1.S1_at11/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.25215.1.S1_at10/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.10482.1.S1_x_at1/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24900Os.10674.1.S1_at11/113+14162432..14166957zinc finger family protein, putative, expressed
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed
LOC_Os03g24930Os.12007.1.S1_at11/113+14185785..14187966Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os03g24940Os.27135.1.A1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_x_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_s_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_at4/113+14192013..14199487proline-rich family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36846.1.S1_at--812--891Chr03:14175490..14175514 (25 bp)
AGGCCCGAAGATTTCATGTCGTCCT
LOC_Os03g24920
Os.36846.1.S1_at--759--3751Chr03:14175467..14175491 (25 bp)
CTCATGATGCAGACTCCTCTTTTCA
LOC_Os03g24920
Os.36846.1.S1_at--393--271Chr03:14175428..14175452 (25 bp)
ATATGTACTCTCCTAAGCTTGTCTC
LOC_Os03g24920
Os.36846.1.S1_at--565--2711Chr03:14175414..14175438 (25 bp)
AAGCTTGTCTCTTTGGATTGCTGCT
LOC_Os03g24920
Os.36846.1.S1_at--714--9651Chr03:14175390..14175414 (25 bp)
TCAGCTTCTCTCCTGTTATAGATGC
LOC_Os03g24920
Os.36846.1.S1_at--890--2571Chr03:14175360..14175384 (25 bp)
AACGGCATTGCATTAATCCTTGATT
LOC_Os03g24920
Os.36846.1.S1_at--646--571Chr03:14175345..14175369 (25 bp)
ATCCTTGATTTGACCATCCAACTGA
LOC_Os03g24920
Os.36846.1.S1_at--1131--8551Chr03:14175318..14175342 (25 bp)
TGGTCTTTTCTACCTACCGAAGCCT
LOC_Os03g24920
Os.36846.1.S1_at--1130--2651Chr03:14175299..14175323 (25 bp)
AAGCCTGTGCGTTCTGGATATTCTC
LOC_Os03g24920
Os.36846.1.S1_at--157--731Chr03:14175089..14175113 (25 bp)
ATGATTCTCGCTGAGGGTTCTCCTA
LOC_Os03g24920
Os.36846.1.S1_at--1109--6131Chr03:14175077..14175101 (25 bp)
GAGGGTTCTCCTAGCTGATTGTTTA
LOC_Os03g24920
Target Sequence 
AGGCCCGAAGATTTCATGTCGTCCTCATGATGCAGACTCCTCTTTTCAANCCCGTGGGTTATATATGTACTCTCCTAAGC
TTGTCTCTTTGGATTGCTGCTCAGCTTCTCTCCTGTTATAGATGCCGGGCAACGGCATTGCATTAATCCTTGATTTGACC
ATCCAACTGATTTGGTCTTTTCTACCTACCGAAGCCTGTGCGTTCTGGATATTCTCCTAAACGCACCCCTGCTTGTACCT
GAGCAGCATGTTGAGAAAGGATCAATTGTGGATTCTGTGGGATCAATGTAATGACTGATTTGTTATAATCATGATTACTC
GCAGATTGGTTATCACAATTCCTATGGGATGNACCAGGTAAACACTGGTACAATTACTNTTGTTTTCCAGGTGATTTATA
TATGATTCTCGCTGAGGGTTCTCCTAGCTGATTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis