Browse Element(s) Details


Os.36852.1.S1_at

Description gb:AK062514.1
DB_XREF= gi:32972532
TID=Os.36852.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0674H09.29 (P0674H09.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C05, full insert sequence.
FL= gb:AK062514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6731411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67340Os.12116.1.S1_at11/111+39418583..39422180Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36852.1.S1_at--1161--8071Chr01:39399360..39399384 (25 bp)
GGAGCTCTCGATCCGCCTGATGGAA
LOC_Os01g67314
Os.36852.1.S1_at--633--7671Chr01:39397269..39397293 (25 bp)
GGGATTTACGACTATTGTCAGCTTA
LOC_Os01g67314
Os.36852.1.S1_at--135--3391Chr01:39397251..39397275 (25 bp)
CAGCTTAGTAATGGTTGCCTGGCTA
LOC_Os01g67314
Os.36852.1.S1_at--88--6691Chr01:39397238..39397262 (25 bp)
GTTGCCTGGCTAATCTATGCGAGAT
LOC_Os01g67314
Os.36852.1.S1_at--766--10131Chr01:39397223..39397247 (25 bp)
TATGCGAGATATACGACCGACGATT
LOC_Os01g67314
Os.36852.1.S1_at--952--1851Chr01:39397211..39397235 (25 bp)
ACGACCGACGATTCAGAGCTTCATG
LOC_Os01g67314
Os.36852.1.S1_at--1111--1351Chr01:39397197..39397221 (25 bp)
AGAGCTTCATGACCCCGCAAAGCTG
LOC_Os01g67314
Os.36852.1.S1_at--542--51Chr01:39397163..39397187 (25 bp)
ATTGTTCTCTCTCTTAGTTTGGCGG
LOC_Os01g67314
Os.36852.1.S1_at--736--10051Chr01:39397149..39397173 (25 bp)
TAGTTTGGCGGCATTCGGCTTCTGC
LOC_Os01g67314
Os.36852.1.S1_at--573--8291Chr01:39397133..39397157 (25 bp)
GGCTTCTGCTCTACTTCAGAAACTG
LOC_Os01g67314
Os.36852.1.S1_at--185--3571Chr01:39397056..39397080 (25 bp)
CATAGTGTGCATGGTCCTAGAAGGA
LOC_Os01g67314
Target Sequence 
GGAGCTCTCGATCCGCCTGATGGAAGAAGGCAGCAGCGCCGGCGGGCATCCACCTCCGACGAGCTGCAGCGACCACGCCT
TGCGCTACTTCATCCGGGGATTTACGACTATTGTCAGCTTAGTAATGGTTGCCTGGCTAATCTATGCGAGATATACGACC
GACGATTCAGAGCTTCATGACCCCGCAAAGCTGTCATTTTTAATTGTTCTCTCTCTTAGTTTGGCGGCATTCGGCTTCTG
CTCTACTTCAGAAACTGAGCTACAGAGACTACTAGATTGATGAGTCCTAGCAAAAGTGGAACACAGTGTCATAGTGTGCA
TGGTCCTAGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis