Browse Element(s) Details


Os.36975.3.S1_x_at

Description gb:NM_189551.1
DB_XREF= gi:34906185
GEN=OJ1174_D05.11
TID=Os.36975.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36975 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative MAR-binding protein MFP1 (OJ1174_D05.11), mRNA.
PROD=putative MAR-binding protein MFP1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0851011/11MAR binding filament-like protein 1, putative, expressed
LOC_Os05g087901/11MAR binding filament-like protein 1-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08480NANA1+4184295..4188517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g08490OsAffx.20858.5.S1_x_at11/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.1.S1_x_at5/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.4.S1_x_at3/111+4193739..4195635hypothetical protein
LOC_Os01g08500Os.11575.2.S1_a_at11/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08500Os.11575.4.S1_x_at11/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08500Os.11575.3.S1_x_at8/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08510Os.36975.3.S1_x_at11/111+4205373..4210104MAR binding filament-like protein 1, putative, expressed
LOC_Os01g08520Os.23583.1.S1_at11/111+4211840..4214349expressed protein
LOC_Os01g08520Os.23583.2.S1_x_at11/111+4211840..4214349expressed protein
LOC_Os01g08530NANA1+4228902..4230362transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08540Os.46027.1.S1_x_at11/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08540Os.50609.1.S1_at10/111+4231375..4241333MutS domain III family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007129biological_processsynapsis
GO:0007131biological_processmeiotic recombination
GO:0000795cellular_componentsynaptonemal complex
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0042646cellular_componentplastid nucleoid
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36975.3.S1_x_at--160--7511Chr01:4206243..4206267 (25 bp)
GTGGAAGCTCGTGACAACCTGAAGA
LOC_Os01g08510
Os.36975.3.S1_x_at--955--6611Chr01:4206193..4206217 (25 bp)
GTTGGAATCCACGTCACAGGAGCTT
LOC_Os01g08510
Os.36975.3.S1_x_at--696--5911Chr01:4206132..4206156 (25 bp)
GAGCTTGAGGCTTTGGTGAAACAAC
LOC_Os01g08510
Os.36975.3.S1_x_at--635--2351Chr01:4206084..4206108 (25 bp)
AAAGCTCTTGAAGCAGACCTGGATG
LOC_Os01g08510
Os.36975.3.S1_x_at--122--2991Chr01:4205956..4205980 (25 bp)
AATGTTATCAAAGGCTCTTGCTGAG
LOC_Os01g08510
Os.36975.3.S1_x_at--588--5351Chr01:4205926..4205950 (25 bp)
GAAGATCACAACTGAAGCTCATGAA
LOC_Os01g08510
Os.36975.3.S1_x_at--438--6172Chr05:4810338..4810357 (20 bp)
GAGGATGCTCAGAATCTTATCTCTA
LOC_Os05g08790
Os.36975.3.S1_x_at--59--451Chr01:4205882..4205906 (25 bp)
ATCTTATCTCTAGGCTTCAGACTGA
LOC_Os01g08510
Os.36975.3.S1_x_at--598--7711Chr01:4205801..4205824 (24 bp)
GGGTGAGATATTGCGCCTAAGAAGT
LOC_Os01g08510
Os.36975.3.S1_x_at--119--4791Chr01:4205703..4205727 (25 bp)
GCTCCAGACGAGCAGCCTGTGAATG
LOC_Os01g08510
Os.36975.3.S1_x_at--565--5131Chr01:4205663..4205687 (25 bp)
GCAAAGTTGCTGCTGGGTCTCAATA
LOC_Os01g08510
Target Sequence 
GTGGAAGCTCGTGACAACCTGAAGAAAGAATTGCTCGATGTGTTCAAGAAGTTGGAATCCACGTCACAGGAGCTTGTTGA
TGAAAGGAAAACTGTCACTACTTTGAATAGGGAGCTTGAGGCTTTGGTGAAACAACTACAGATGGATTCTGAAGCACGAA
AAGCTCTTGAAGCAGACCTGGATGAAGCAACAAAGTCACTAGACGAGATGAACAGGAGTGCATTATCACTATCAAAGGAG
CTAGAGGAAACTAATTCTAGGAAGGACACTCTTGAAGCAGAGAAAAAAATGTTATCAAAGGCTCTTGCTGAGCAACAGAA
GATCACAACTGAAGCTCATGAAAACACTGAGGATGCTCAGAATCTTATCTCTAGGCTTCAGACTGAGAAGGAGAGTTTTG
AAATGAGGGCTAGACATCTTGAAGAGGAGTTGGCGTTAGCAAAGGGTGAGATATTGCGCCTAAGAAGTCAGGCTCCAGAC
GAGCAGCCTGTGAATGATAATCAGAATACCAGCAAAGTTGCTGCTGGGTCTCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36975.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis