Browse Element(s) Details


Os.37238.1.S1_at

Description gb:AK059903.1
DB_XREF= gi:32969921
TID=Os.37238.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-G09, full insert sequence.
FL= gb:AK059903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0969010/11CCAAT-binding transcription factor subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein
LOC_Os08g09660OsAffx.16924.1.S1_x_at11/118+5574233..5574541hypothetical protein
LOC_Os08g09660OsAffx.21629.2.S1_x_at3/118+5574233..5574541hypothetical protein
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09680NANA8+5586749..5587060hypothetical protein
LOC_Os08g09690Os.37238.1.S1_at10/118+5591210..5594767CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os08g09700OsAffx.29122.1.S1_at11/118+5596338..5600722F-box domain containing protein
LOC_Os08g09710Os.56260.1.S1_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09710Os.56260.1.S1_x_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_x_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720Os.57083.1.S1_x_at10/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09730Os.54840.1.S1_at11/118+5617319..5620279F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37238.1.S1_at--176--2271NONE
AAATCCGCAAGCCTTACCTACATGA
NONE
Os.37238.1.S1_at--85--4211Chr08:5594234..5594258 (25 bp)
CCCGCCATCTGCATGCTTTGAAAAG
LOC_Os08g09690
Os.37238.1.S1_at--171--7491Chr08:5594273..5594297 (25 bp)
GTGGTCGATTTCTCAACTCTAAGGC
LOC_Os08g09690
Os.37238.1.S1_at--189--8551Chr08:5594399..5594423 (25 bp)
TGGAGAACTCGAGCCCAACAACACA
LOC_Os08g09690
Os.37238.1.S1_at--740--1291Chr08:5594433..5594457 (25 bp)
AGATGCGTCCGATGTTGTATGATGC
LOC_Os08g09690
Os.37238.1.S1_at--771--8851Chr08:5594452..5594476 (25 bp)
TGATGCAAATTTAGCCAATCCCTCC
LOC_Os08g09690
Os.37238.1.S1_at--1072--511Chr08:5594499..5594523 (25 bp)
ATCGATCGAATTGTGTGCTTGCTTT
LOC_Os08g09690
Os.37238.1.S1_at--1036--4911Chr08:5594515..5594539 (25 bp)
GCTTGCTTTCTGTTCGTGACAGTTT
LOC_Os08g09690
Os.37238.1.S1_at--80--2111Chr08:5594597..5594621 (25 bp)
ACATGTTGTGGGAGCAGTTCAGTGC
LOC_Os08g09690
Os.37238.1.S1_at--520--6551Chr08:5594643..5594667 (25 bp)
GATTATGAACCTTGTGTCACTGTTG
LOC_Os08g09690
Os.37238.1.S1_at--913--3331Chr08:5594660..5594684 (25 bp)
CACTGTTGTGTTTTGCTTCTGTTAA
LOC_Os08g09690
Target Sequence 
AAATCCGCAAGCCTTACCTACATGAGTCCCGCCATCTGCATGCTTTGAAAAGGGCAAGGGGGTCCNGGTGGTCGATTTCT
CAACTCTAAGGCNGTGGAGGGGAAGCAAGACACTAAATCTGTAGATAAAAAGGATGGAGCTGTGCCATCTGAGGAGAAGA
GAGACAANAAGTTGGCAAATAGCATTATCAAATTGGAGAACTCGAGCCCAACAACACAACCAGGNGCAGATGCGTCCGAT
GTTGTATGATGCAAATTTAGCCAATCCCTCCCTAATCCAACCAAATTGCCAGAATCGATCGAATTGTGTGCTTGCTTTCT
GTTCGTGACAGTTTAAGTCTGTACATAGCTGTTAGTTTTGATGATTGGATAAATCCATGATAGTATAGTGAACATGTTGT
GGGAGCAGTTCAGTGCTAGGGTTTGTTGCTGAGTGTAGATTATGAACCTTGTGTCACTGTTGTGTTTTGCTTCTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis