Browse Element(s) Details


Os.37376.2.S1_x_at

Description gb:NM_190044.1
DB_XREF= gi:34907171
GEN=P0423A12.23
TID=Os.37376.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0423A12.23 (P0423A12.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0423A12.23 (P0423A12.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g708208/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70780Os.15888.1.A1_at11/111+41293537..41297904SVP1-like protein 2, putative, expressed
LOC_Os01g70790Os.11919.1.S1_at11/111+41300236..41301629XYPPX repeat family protein, expressed
LOC_Os01g70800Os.11148.1.S1_at11/111+41305292..41310419Mitochondrial carrier protein, expressed
LOC_Os01g70810Os.18365.1.S1_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70810Os.18365.1.S2_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70820Os.37376.2.S1_x_at8/111+41321152..41323981expressed protein
LOC_Os01g70830Os.33625.3.S1_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70830Os.33625.5.S1_x_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70840Os.33625.3.S1_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70840Os.33625.5.S1_x_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70850Os.33625.4.S1_at11/111+41331154..41332828Esterase PIR7B, putative, expressed
LOC_Os01g70860Os.3417.1.S1_at11/111+41334170..41336091Esterase PIR7A, putative, expressed
LOC_Os01g70870Os.34720.1.S1_at11/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70870Os.19512.2.S1_x_at2/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70880OsAffx.23993.1.S1_at11/111+41348327..41348761CCAAT-binding transcription factor subunit A, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37376.2.S1_x_at--938--1431Chr01:41323250..41323274 (25 bp)
AGAACTGCAGAGATCACTAGACCCT
LOC_Os01g70820
Os.37376.2.S1_x_at--463--8431Chr01:41323306..41323330 (25 bp)
GGCCTCGGAACATCAGTGAACCTGT
LOC_Os01g70820
Os.37376.2.S1_x_at--212--2991Chr01:41323368..41323392 (25 bp)
AATGTCAGTGTCATCGTTTCACCTG
LOC_Os01g70820
Os.37376.2.S1_x_at--727--8711Chr01:41323391..41323669 (25 bp)
TGTCCCACAAGATTTCTCGATCGAG
LOC_Os01g70820
Os.37376.2.S1_x_at--39--6391Chr01:41323663..41323687 (25 bp)
GATCGAGGCTTTTGGTGGCCCTAAA
LOC_Os01g70820
Os.37376.2.S1_x_at--1047--6491Chr01:41323739..41323763 (25 bp)
GATATAAACGCCACTCTTCTTGATG
LOC_Os01g70820
Os.37376.2.S1_x_at--419--9571Chr01:41323753..41323777 (25 bp)
TCTTCTTGATGCTGCCCTGAGAGAA
LOC_Os01g70820
Os.37376.2.S1_x_at--571--4771Chr01:41323811..41323835 (25 bp)
GAGTTCCGAGTTGAAAGCCCTTCCT
LOC_Os01g70820
Os.37376.2.S1_x_at--928--8311Chr01:41323969..41324327 (25 bp)
GGCTGATAGGAAGCTACACTTTGGA
NONE
Os.37376.2.S1_x_at--728--8071Chr01:41324339..41324363 (25 bp)
GGAGCAGACATCTCTGTGTTTGGAG
NONE
Os.37376.2.S1_x_at--71--8611Chr01:41324365..41324389 (25 bp)
TGGGTGTTGGGAACCTCCGATGCAC
NONE
Target Sequence 
AGAACTGCAGAGATCACTAGACCCTCCCCCATTGGCAAATGGGAGGTCCCCATCACGGCCTCGGAACATCAGTGAACCTG
TGGCAGCTTTTGGCCCCCCAGGATCCAGTGGGGAGCTCAATGTCAGTGTCATCGTTTCACCTGTCCCACAAGATTTCTCG
ATCGAGGCTTTTGGTGGCCCTAAAGATGTTGGGGAGGTGGTTCTCAGAAGGATCGCAAAGACAAAGCGGGGCGCAGATAT
AAACGCCACTCTTCTTGATGCTGCCCTGAGAGAAGATCCAGCGAACAATGTGAAATACTACAAGCTAGAGTTCCGAGTTG
AAAGCCCTTCCTTTCGACGACGCAATGTCGCAGTGTGCTGCGCGAAGGATGGGAAACTATACACCCTGAACGCTCAGGCT
CCGGAGTCGGCGTGGAAGGCGGTTCGGAAAGAGTTCCTTGCAATGGCAGATTCATTCAGCCTAGTGGCTGATAGGAAGCT
ACACTTTGGAGATTGGCGAGGGGAGCAGACATCTCTGTGTTTGGAGGTGGGTGTTGGGAACCTCCGATGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37376.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis