Browse Element(s) Details


Os.37430.1.S1_at

Description gb:AK058585.1
DB_XREF= gi:32968603
TID=Os.37430.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G01, full insert sequence.
FL= gb:AK120926.1 gb:AK058585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0472011/11Two-component response regulator ARR8, putative, expressed
LOC_Os12g045005/11Two-component response regulator ARR8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04670Os.11248.1.S1_at10/1111+1985059..19909422-isopropylmalate synthase B, putative, expressed
LOC_Os11g04680OsAffx.19490.1.S1_at11/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04680OsAffx.19490.2.S1_at1/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04690OsAffx.18669.1.S1_at11/1111+1994648..1995343Zinc finger, C3HC4 type family protein
LOC_Os11g04700OsAffx.31577.1.S1_s_at11/1111+1997078..2000551expressed protein
LOC_Os11g04700OsAffx.31577.2.S1_at1/1111+1997078..2000551expressed protein
LOC_Os11g04710Os.23206.1.S1_at10/1111+2002827..2005916Cytochrome P450 family protein, expressed
LOC_Os11g04720Os.37430.1.S1_at11/1111+2009238..2011255Two-component response regulator ARR8, putative, expressed
LOC_Os11g04730Os.9249.1.S1_at9/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04730Os.37965.1.S1_at1/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04740Os.18691.1.S1_at11/1111+2015624..2020065L-galactono-1,4-lactone dehydrogenase, putative, expressed
LOC_Os11g04750OsAffx.19491.1.S1_at11/1111+2020289..2021508hypothetical protein
LOC_Os11g04760OsAffx.30819.1.S1_at10/1111+2023666..2024973hypothetical protein
LOC_Os11g04770OsAffx.19494.1.S1_at11/1111+2025739..2026179EF hand family protein
LOC_Os11g04780NANA11+2033347..2034735retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37430.1.S1_at--77--9792Chr12:1915588..1915612 (25 bp)
TAAGGGACATCCCAGTTGTGATCAT
LOC_Os12g04500
Os.37430.1.S1_at--410--5192Chr12:1916356..1916380 (25 bp)
TGAATTTTTCCTCAAACCAGTTCGG
LOC_Os12g04500
Os.37430.1.S1_at--471--2692Chr12:1916396..1916420 (25 bp)
AAGCTGAAGCCCCACATACTGAAAA
LOC_Os12g04500
Os.37430.1.S1_at--944--4972Chr12:1916484..1916508 (25 bp)
GCAGTAACCCCACAAGCGAGAACAG
LOC_Os12g04500
Os.37430.1.S1_at--811--7212Chr12:1916549..1916573 (25 bp)
GTCGATGAAGAAATTTTGCCCCACA
LOC_Os12g04500
Os.37430.1.S1_at--484--4972Chr12:1916601..1916625 (25 bp)
GCATCTGACTGGTCATTTGACACTG
NONE
Os.37430.1.S1_at--33--10732Chr12:1916637..1916661 (25 bp)
TTGCTTCTGTCTGATCGGTTTTTGA
NONE
Os.37430.1.S1_at--593--9292Chr12:1916715..1916739 (25 bp)
TCCGTTAACGGATACTGCTTGAATT
NONE
Os.37430.1.S1_at--612--6572Chr12:1916749..1916773 (25 bp)
GATTCTCAGTTCATCACATTGTGAT
NONE
Os.37430.1.S1_at--801--6532Chr12:1916771..1916795 (25 bp)
GATTTTAAGCCAGTTAAGCCTTCAA
NONE
Os.37430.1.S1_at--95--1671Chr11:2011179..2011203 (25 bp)
AGCCTTCAAATTCCTGCTGAGATTA
LOC_Os11g04720
Target Sequence 
TAAGGGACATCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAGATGCCTGGAGGAAGGAGCTGAT
GAATTTTTCCTCAAACCAGTTCGGCTCTCCGACATGAGCAAGCTGAAGCCCCACATACTGAAAAGCAGATGCAAGGAGCA
CTACCAGCAGGAACAAAACCTGCAAAGCAACAGCGAAAGCAACAACAGCAGTAACCCCACAAGCGAGAACAGCAGCAGCA
GCACTAGCAGCAACAGCCACAAGAGAAAGGCAGTCGATGAAGAAATTTTGCCCCACACAATAAGACCAAGGCATAGTTGA
TTTAGCATCTGACTGGTCATTTGACACTGATTTTTTTTCTTGCTTCTGTCTGATCGGTTTTTGACATACAGATTCGTAAA
AGGGATACTAACATCTAGTTTACAAAATAGAATGGAATCCGTTAACGGATACTGCTTGAATTCGAATGGGTGATTCTCAG
TTCATCACATTGTGATTTTAAGCCAGTTAAGCCTTCAAATTCCTGCTGAGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis