Browse Element(s) Details


Os.37510.1.S1_at

Description gb:AK120752.1
DB_XREF= gi:37990375
TID=Os.37510.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0468B07.17 (P0468B07.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006E09, full insert sequence.
FL= gb:AK102143.1 gb:AK120752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5950011/11U3 small nucleolar RNA-associated protein 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein
LOC_Os01g59460OsAffx.11661.1.S1_x_at11/111+34724153..34724440hypothetical protein
LOC_Os01g59470OsAffx.23857.1.S1_at11/111+34725279..34726990hypothetical protein
LOC_Os01g59480OsAffx.11662.1.S1_at11/111+34728561..34729955hypothetical protein
LOC_Os01g59490Os.27966.1.S1_a_at11/111+34733225..34736049FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59520Os.52792.1.S1_at11/111+34743963..34747179expressed protein
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59540NANA1+34752667..34753898GRF zinc finger family protein
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.3.S1_x_at11/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.7.S1_x_at2/111+34764111..34771226Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37510.1.S1_at--375--4951Chr01:34736637..34736661 (25 bp)
GCATTTACATGTAGCAGTGCCCCTC
LOC_Os01g59500
Os.37510.1.S1_at--53--9531Chr01:34736602..34736626 (25 bp)
TCTCTTCATAGCCTTCACTTGATTG
LOC_Os01g59500
Os.37510.1.S1_at--1009--10591Chr01:34736549..34736573 (25 bp)
TTCTGCTACCTGCTACTGATGTGAT
LOC_Os01g59500
Os.37510.1.S1_at--895--7391Chr01:34736529..34736553 (25 bp)
GTGATGTACCTCTGCTTTTTACAAA
LOC_Os01g59500
Os.37510.1.S1_at--203--8951Chr01:34736481..34736505 (25 bp)
TTGAGAACCTAAACGGTCCGAATCT
LOC_Os01g59500
Os.37510.1.S1_at--645--9411Chr01:34736449..34736473 (25 bp)
TCGTCCGTAATCAACATTCCAAGGT
LOC_Os01g59500
Os.37510.1.S1_at--716--3451Chr01:34736415..34736439 (25 bp)
CAGTGCCACCAGAATTAGGGCGTGT
LOC_Os01g59500
Os.37510.1.S1_at--760--10071Chr01:34736400..34736424 (25 bp)
TAGGGCGTGTTCACTTTGCCGGAAA
LOC_Os01g59500
Os.37510.1.S1_at--608--7451Chr01:34736305..34736329 (25 bp)
GTGTCATTGGCTTTGATACCTTACT
LOC_Os01g59500
Os.37510.1.S1_at--402--7351Chr01:34736200..34736224 (25 bp)
GTGCAATCCTATTTGTTTGTTACCC
LOC_Os01g59500
Os.37510.1.S1_at--426--5511Chr01:34736118..34736142 (25 bp)
GAACAAGCCACTCTTTAGTGTATGA
LOC_Os01g59500
Target Sequence 
GCATTTACATGTAGCAGTGCCCCTCCACAACCGTCTCTCTTCATAGCCTTCACTTGATTGTATTTGTGGNTCCATGTTGG
ATACCACTTTCTGCTACCTGCTACTGATGTGATGTACCTCTGCTTTTTACAAAATGTTGGGTAACTACATCAACAATTGA
GAACCTAAACGGTCCGAATCTTCACGCNTCGTCCGTAATCAACATTCCAAGGTTAGCAAGCACAGTGCCACCAGAATTAG
GGCGTGTTCACTTTGCCGGAAAAAAAACATACCATTTGATGGTAGAGCCAAATATTAGTAATGCCATTCTTTGGTAAAGT
CAAAATATCAATGTGTCATTGGCTTTGATACCTTACTAAATTTTGGTGTAATTTTTGTGAGTGGAAGGTTCCGGAATTAC
CAAATTACCTTACTAAATTTTGGTGTAATTTTTGTGAGTGCAATCCTATTTGTTTGTTACCCTACCAACAAAAATTTGAC
AATACCAAAATTTAGTAAGGTTTATTCTGGTAGTGGAGTGAACAAGCCACTCTTTAGTGTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis