Browse Element(s) Details


Os.37520.1.S1_at

Description gb:AK121137.1
DB_XREF= gi:37990760
TID=Os.37520.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077F04, full insert sequence.
FL= gb:AK121137.1 gb:AK062041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4264011/11FYVE zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42620OsAffx.5612.1.S1_at11/117+25506866..25511148hypothetical protein
LOC_Os07g42626Os.42801.1.S1_at11/117+25514758..25521487leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os07g42632OsAffx.5613.1.S1_x_at11/117+25522808..25525237dihydropteroate synthase family protein, expressed
LOC_Os07g42640Os.37520.1.S1_at11/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42640Os.48008.1.S1_x_at10/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42650Os.22703.1.S1_at11/117+25534289..25537605expressed protein
LOC_Os07g42660Os.33794.2.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42660OsAffx.28877.1.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42670NANA7+25546994..25548058retrotransposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.4.S1_x_at6/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.3.S1_x_at4/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_at3/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.2.S1_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_x_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.20729.1.S1_x_at1/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.1.S1_x_at11/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.3.S1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.4.A1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.8420.1.S1_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.20380.2.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22927.1.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37520.1.S1_at--252--9091Chr07:25531111..25531561 (25 bp)
TGCTACATTTGGCTGCACTATTTAA
LOC_Os07g42640
Os.37520.1.S1_at--446--3291Chr07:25532143..25532167 (25 bp)
CACAACGACCCTAGTGATATTTTTC
LOC_Os07g42640
Os.37520.1.S1_at--668--8791Chr07:25532174..25532198 (25 bp)
TGTTCATGTGCCAAAGATGGTGCCC
LOC_Os07g42640
Os.37520.1.S1_at--905--4991Chr07:25532205..25532229 (25 bp)
GCATGGCCCAGAATAAAACCATTTT
LOC_Os07g42640
Os.37520.1.S1_at--754--7551Chr07:25532241..25532265 (25 bp)
GGGCCTCTTTGCTGTGGGTATAGTA
LOC_Os07g42640
Os.37520.1.S1_at--482--3892Chr07:25532252..25532276 (25 bp)
CTGTGGGTATAGTAGTATTTCTGTT
LOC_Os07g42640
Os.37520.1.S1_at--1078--2191Chr07:25532303..25532327 (25 bp)
ACAACACCAGCTCATAAACTGCATG
LOC_Os07g42640
Os.37520.1.S1_at--286--2391Chr07:25532318..25532342 (25 bp)
AAACTGCATGTTTCGCCAGCTAAAA
LOC_Os07g42640
Os.37520.1.S1_at--575--3151Chr07:25532347..25532371 (25 bp)
AATTCATTGTGCTTAATCTTGCCAT
LOC_Os07g42640
Os.37520.1.S1_at--423--3071Chr07:25532361..25532385 (25 bp)
AATCTTGCCATGTCATCGTGCATAC
LOC_Os07g42640
Os.37520.1.S1_at--408--271Chr07:25532408..25532432 (25 bp)
ATATGTCCTGGTTTATTATTAGCAT
LOC_Os07g42640
Target Sequence 
TGCTACATTTGGCTGCACTATTTAACCAGACAGAGATTGCTCTTATTCTCATGGATAATGGAGCAAATATTCAGAGCNAN
AAATGGACAAGGGGAAACTCCTTNGGATTGTGCTCCAGCCATGCTGCAATACAAGATGCGCCAGAGGATGGAAGAACTTG
CGGCATCACAACGACCCTAGTGATATTTTTCTCCTCTTGTTCATGTGCCAAAGATGGTGCCCCCCCTTGCATGGCCCAGA
ATAAAACCATTTTTACCAACCGAGGGGCCTCTTTGCTGTGGGTATAGTAGTATTTCTGTTGGCACCATCGCCTNCAAAAT
GTCAAAACAACACCAGCTCATAAACTGCATGTTTCGCCAGCTAAAAAAATAATTCATTGTGCTTAATCTTGCCATGTCAT
CGTGCATACATATGTTCATGTATATGTAATCATATGTCCTGGTTTATTATTAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis