Browse Element(s) Details


Os.37564.3.S1_x_at

Description gb:NM_190671.1
DB_XREF= gi:34908425
GEN=OJ1402_H07.12
TID=Os.37564.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1402_H07.12 (OJ1402_H07.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1402_H07.12 (OJ1402_H07.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6382010/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63770Os.6258.1.S1_a_at11/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63770OsAffx.7026.1.S1_x_at2/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63780OsAffx.11715.1.S1_at10/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63780Os.25247.1.A1_at2/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63790NANA1+37338746..37340164expressed protein
LOC_Os01g63800Os.16802.1.S1_a_at11/111+37343933..37344897Pleckstrin homology domain-containing protein 1, putative, expressed
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009628biological_processresponse to abiotic stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0019204molecular_functionnucleotide phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37564.3.S1_x_at--68--4591Chr01:37353769..37354197 (25 bp)
GCGAATCCAGGGTTCTATTTAGTAA
LOC_Os01g63820
Os.37564.3.S1_x_at--345--5411Chr01:37353707..37353731 (25 bp)
GAAGCCCAAGTACTAGCTGCTGAAA
LOC_Os01g63820
Os.37564.3.S1_x_at--150--151Chr01:37353506..37353530 (25 bp)
ATTACTTGTCATTCATGGCTCCTGT
LOC_Os01g63820
Os.37564.3.S1_x_at--359--8491Chr01:37353491..37353515 (25 bp)
TGGCTCCTGTTGCTGGAGTTCTTAA
LOC_Os01g63820
Os.37564.3.S1_x_at--409--1311Chr01:37353463..37353487 (25 bp)
AGATGTGAACAAGCCTCCTGGGAGT
LOC_Os01g63820
Os.37564.3.S1_x_at--190--8311Chr01:37353432..37353456 (25 bp)
GGCTTTCTCGAAGATATTACTCTCT
LOC_Os01g63820
Os.37564.3.S1_x_at--27--7931Chr01:37353335..37353359 (25 bp)
GGTTGTCCTCTGTTATAAGTCTTAT
LOC_Os01g63820
Os.37564.3.S1_x_at--90--6551NONE
GATTTTGCGAAGCTTCAGGCTGCAG
NONE
Os.37564.3.S1_x_at--2--3011Chr01:37351096..37351119 (24 bp)
AATGCAACAGCTGAATTTCCCCTTA
LOC_Os01g63820
Os.37564.3.S1_x_at--302--2711Chr01:37350603..37350627 (25 bp)
AAGCATTGCAAATCATGGACATCAT
LOC_Os01g63820
Os.37564.3.S1_x_at--818--5671Chr01:37350586..37350610 (25 bp)
GACATCATTTTTACTAGATCACCAG
LOC_Os01g63820
Target Sequence 
GCGAATCCAGGGTTCTATTTAGTAATGAAAAAATCGGGATCGGCATTGGAAAAACAAGAGATGAAGCCCAAGTACTAGCT
GCTGAAAAAGCTCTCCAGAATTTGGAAAGCAATTACTTGTCATTCATGGCTCCTGTTGCTGGAGTTCTTAATAAAGATGT
GAACAAGCCTCCTGGGAGTGGAAATGGCTTTCTCGAAGATATTACTCTCTCAGAGGATATTTCTATGGAAGAGCCATCTG
GAAGTACATTAAAAGAACAGGATCATTCAAAAGCTTTGGATAGGTTGTCCTCTGTTATAAGTCTTATTAGAGAACTTGCT
GAATTAGGAGGACAAATTCTTGGGAGGGGCATTGATTTGAACAAAGATTTTGCGAAGCTTCAGGCTGCAGAAGAGGCGCT
GAAGACCTTGAAAACAACTACGGACCCACAAATCAAGAAGCATTTGAGACCAATGCAACAGCTGAATTTCCCCTTATATC
CCACAGAGAAAGCATTGCAAATCATGGACATCATTTTTACTAGATCACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37564.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis