Browse Element(s) Details


Os.37602.1.S1_at

Description gb:AK068245.1
DB_XREF= gi:32978263
TID=Os.37602.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative c6 type cytochrome (OJ1092_A07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013140D13, full insert sequence.
FL= gb:AK068245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3800011/11Cytochrome c family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37950Os.30337.1.S1_at11/117+22772455..22773493disease resistance protein, putative, expressed
LOC_Os07g37960OsAffx.22483.1.S1_at11/117+22778414..22781911exostosin family protein, putative, expressed
LOC_Os07g37970OsAffx.16605.1.S1_at11/117+22783473..22785671Cytochrome P450 51, putative
LOC_Os07g37980OsAffx.28806.1.S1_at11/117+22787237..22789492Cytochrome P450 51, putative
LOC_Os07g37990Os.10954.1.S1_at11/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g37990Os.18186.1.S1_at1/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g38000Os.37602.2.S1_x_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38000Os.37602.1.S1_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38010NANA7+22800855..22801187hypothetical protein
LOC_Os07g38020OsAffx.16606.1.A1_at3/117+22803962..22804693hypothetical protein
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed
LOC_Os07g38040OsAffx.28808.1.S1_at11/117+22810054..22810287expressed protein
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37602.1.S1_at--116--571Chr07:22797905..22797929 (25 bp)
ATCCTACAGCCGGTAAGCTTCTGAA
LOC_Os07g38000
Os.37602.1.S1_at--122--2711Chr07:22797891..22797915 (25 bp)
AAGCTTCTGAAACCATTACTCGATG
LOC_Os07g38000
Os.37602.1.S1_at--157--2371Chr07:22797882..22797906 (25 bp)
AAACCATTACTCGATGGCCGGACAC
LOC_Os07g38000
Os.37602.1.S1_at--280--9351Chr07:22797872..22797896 (25 bp)
TCGATGGCCGGACACAAATTTTCAA
LOC_Os07g38000
Os.37602.1.S1_at--394--8351Chr07:22797409..22797433 (25 bp)
GGCGATGGAGATTAGTTCACCGACA
LOC_Os07g38000
Os.37602.1.S1_at--213--6751Chr07:22797395..22797419 (25 bp)
GTTCACCGACACAACAGAGACAAGT
LOC_Os07g38000
Os.37602.1.S1_at--518--10791Chr07:22797362..22797386 (25 bp)
TTGTTCAGTGAACCAGTGTATAGTT
LOC_Os07g38000
Os.37602.1.S1_at--624--10191Chr07:22797344..22797368 (25 bp)
TATAGTTTGGAGTCAGGTGTGCTGT
LOC_Os07g38000
Os.37602.1.S1_at--1124--7111Chr07:22797333..22797357 (25 bp)
GTCAGGTGTGCTGTTTGCATCTGTA
LOC_Os07g38000
Os.37602.1.S1_at--419--8771Chr07:22797322..22797346 (25 bp)
TGTTTGCATCTGTAAAATCCCAACG
LOC_Os07g38000
Os.37602.1.S1_at--148--5111Chr07:22797163..22797187 (25 bp)
GCACAATCCGACTGTAAATTACGAG
LOC_Os07g38000
Target Sequence 
ATCCTACAGCCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACNNNNNTNNTANNNNNNNNANT
NNNCNNNNNCNGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATAT
AACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGC
TGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAAGATCGACGGCGAT
GGAGATTAGTTCACCGACACAACAGAGACAAGTGGCAAACATTGTTCAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTG
CTGTTTGCATCTGTAAAATCCCAACGNAATCCATACAAATAAAAAGTAGCTTAGGCCGTGTTTAGATTTCAACTTTTTTT
TCAAACTTCCAACTTTTTNCGTCACATCAAATGTTTGGACNCATTTATGNNGCATCAAATGTGGACGAAAAAAANCCNAT
NTGCACAATCCGACTGTAAATTACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis