Browse Element(s) Details


Os.37652.2.S1_at

Description gb:AK120148.1
DB_XREF= gi:37989771
TID=Os.37652.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0702H08.11 (P0702H08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029J05, full insert sequence.
FL= gb:AK120148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3462011/11glutaredoxin-related protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34580OsAffx.21290.1.S1_at11/111+19397755..19398063hypothetical protein
LOC_Os01g34590Os.55307.1.S1_at9/111+19399908..19400737expressed protein
LOC_Os01g34600OsAffx.21289.2.S1_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34600OsAffx.21289.2.S1_x_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34610Os.28769.1.S1_at11/111+19406097..19410322expressed protein
LOC_Os01g34610Os.28769.1.S2_at11/111+19406097..19410322expressed protein
LOC_Os01g34620Os.37652.2.S1_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.1.S1_a_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_x_at6/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_at2/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34639NANA1+19433637..19434067NA
LOC_Os01g34650OsAffx.17536.1.S1_at1/111+19435496..19436383NA
LOC_Os01g34660Os.34335.1.S1_x_at9/111+19437755..19440162expressed protein
LOC_Os01g34660Os.34335.1.S1_at7/111+19437755..19440162expressed protein
LOC_Os01g34670Os.32787.2.S1_x_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34670Os.32787.3.S1_s_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006812biological_processcation transport
GO:0005739cellular_componentmitochondrion
GO:0005489molecular_functionelectron transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37652.2.S1_at--1105--7651Chr01:19419355..19419379 (25 bp)
GGGATTTCTCCTTTCTGAATTTTCG
LOC_Os01g34620
Os.37652.2.S1_at--491--6451Chr01:19419410..19419434 (25 bp)
GATCACGCATTGTTTTTTGTGCAGA
LOC_Os01g34620
Os.37652.2.S1_at--541--2911Chr01:19419477..19419501 (25 bp)
AAGGATGGTGGAACCCTCTGTTCTA
LOC_Os01g34620
Os.37652.2.S1_at--489--1191Chr01:19419501..19419525 (25 bp)
AGTAGTATCCAAGTGCAACCTCTCT
LOC_Os01g34620
Os.37652.2.S1_at--469--7351Chr01:19419513..19419537 (25 bp)
GTGCAACCTCTCTTTCATTATTTTA
LOC_Os01g34620
Os.37652.2.S1_at--373--3091Chr01:19419538..19419562 (25 bp)
AATAAATGCCATTCTGCTACGCCGT
LOC_Os01g34620
Os.37652.2.S1_at--579--4851Chr01:19419553..19419577 (25 bp)
GCTACGCCGTTTAGTAAATGCCACT
LOC_Os01g34620
Os.37652.2.S1_at--283--3031Chr01:19419569..19419593 (25 bp)
AATGCCACTGTTTCTTTTTGGGCTA
LOC_Os01g34620
Os.37652.2.S1_at--61--10091Chr01:19419615..19419639 (25 bp)
TAGGGTCTTGTATACAGCACTGTTC
LOC_Os01g34620
Os.37652.2.S1_at--60--8811Chr01:19419635..19419659 (25 bp)
TGTTCTGTTCTACCACTTGATCTGA
LOC_Os01g34620
Os.37652.2.S1_at--374--8831Chr01:19419652..19419676 (25 bp)
TGATCTGACCTGTGTTACTAACCGA
LOC_Os01g34620
Target Sequence 
GGGATTTCTCCTTTCTGAATTTTCGTTTCTGTTTCATGGGTAGTATTTTTTTAGTGATCACGCATTGTTTTTTGTGCAGA
ACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGGTGGAACCCTCTGTTCTAGTAGTATCCAAGT
GCAACCTCTCTTTCATTATTTTAAATAAATGCCATTCTGCTACGCCGTTTAGTAAATGCCACTGTTTCTTTTTGGGCTAA
GCTGTGATTATACAAGTGATTAGGGTCTTGTATACAGCACTGTTCTGTTCTACCACTTGATCTGACCTGTGTTACTAACC
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37652.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis